View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_17 (Length: 307)
Name: NF8549_low_17
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 2820543 - 2820679
Alignment:
| Q |
14 |
gatggatgatcatgctcgtttcgtttttaggactaacaaatggatcttccaaccttggtcaccatatttttccgtgaagtaatgttgggatcaacaagaa |
113 |
Q |
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| T |
2820543 |
gatggatgatcatgctcgtttcgttcttaggactaacaaatggatcttccaaccttggtcaccatattttgctgtgaagtaatgttgggatcaacaagaa |
2820642 |
T |
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| Q |
114 |
tctagaaagagtggcaaccaataagccctttctggat |
150 |
Q |
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| T |
2820643 |
tctagaaagagtggcaaccaataagccctttctggat |
2820679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 2820781 - 2820929
Alignment:
| Q |
151 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttca |
250 |
Q |
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| T |
2820781 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccagtatcttca |
2820880 |
T |
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| Q |
251 |
tacaataaggtatgta------tatgaaactatgattcatgtttgattt |
293 |
Q |
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| T |
2820881 |
tacaataaggtatgtatttctctatgaaactatgattcatgtttgattt |
2820929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 2815005 - 2815109
Alignment:
| Q |
151 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaag-atatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttc |
249 |
Q |
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| T |
2815005 |
atgtttttgtcaaaatccactttg-aagttgtatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgtccagtatcttc |
2815103 |
T |
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| Q |
250 |
atacaa |
255 |
Q |
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| T |
2815104 |
atacaa |
2815109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 2814803 - 2814896
Alignment:
| Q |
55 |
ggatcttccaaccttggtcaccatatttttccgtgaagtaa--tgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttct |
146 |
Q |
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| T |
2814803 |
ggatcatccaaccttggtcaccatattttgctgcaaagtaaaatgctgggatcaacaagaatctagaaagagtagcaaccaataatccctttct |
2814896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 2835824 - 2835753
Alignment:
| Q |
56 |
gatcttccaaccttggtcaccatatttttccgtgaagta--atgttgggatcaacaagaatctagaaagagt |
125 |
Q |
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| T |
2835824 |
gatcatccatccttggtcaccatattttgcagtaaagtagaatgctggaaccaacaagaatctagaaagagt |
2835753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 1428333 - 1428235
Alignment:
| Q |
157 |
ttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttcatacaa |
255 |
Q |
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| T |
1428333 |
ttgtcaaaattcaatttggaagttgaatgcatcaaaatatatggaattgataaatgcttaccatgttcctagcttgtgttgtccggtatcttcatacaa |
1428235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 1428544 - 1428451
Alignment:
| Q |
55 |
ggatcttccaaccttggtcaccatatttttccgtgaagtaa--tgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttct |
146 |
Q |
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| T |
1428544 |
ggatcatccaaccttggtcaccatattttgctgtgaagtaaaatgctgggatcaacaagaatctagaaagagtagcaaccaataaaccctttct |
1428451 |
T |
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