View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8549_low_19 (Length: 262)

Name: NF8549_low_19
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8549_low_19
NF8549_low_19
[»] chr5 (19 HSPs)
chr5 (89-253)||(43362878-43363054)
chr5 (17-89)||(15464342-15464414)
chr5 (20-88)||(35387474-35387542)
chr5 (20-88)||(38191983-38192051)
chr5 (20-88)||(38219208-38219276)
chr5 (20-88)||(24135659-24135727)
chr5 (17-71)||(36932565-36932619)
chr5 (17-67)||(3880133-3880184)
chr5 (35-89)||(31180078-31180133)
chr5 (17-88)||(1457370-1457445)
chr5 (17-88)||(27444771-27444846)
chr5 (17-67)||(17004175-17004226)
chr5 (19-89)||(42126625-42126694)
chr5 (17-89)||(14520038-14520110)
chr5 (17-89)||(27449614-27449690)
chr5 (17-89)||(43598524-43598600)
chr5 (17-89)||(43604016-43604092)
chr5 (17-89)||(43609508-43609584)
chr5 (17-88)||(19588557-19588627)
[»] chr7 (17 HSPs)
chr7 (20-89)||(21645817-21645886)
chr7 (20-98)||(21639610-21639688)
chr7 (20-89)||(18408575-18408644)
chr7 (17-89)||(1533659-1533731)
chr7 (20-89)||(18413452-18413521)
chr7 (17-89)||(2580198-2580269)
chr7 (20-88)||(20357769-20357837)
chr7 (20-88)||(2057765-2057834)
chr7 (17-88)||(9190223-9190294)
chr7 (17-89)||(9185378-9185450)
chr7 (17-89)||(49091471-49091543)
chr7 (34-89)||(3047062-3047116)
chr7 (17-67)||(29159633-29159684)
chr7 (17-88)||(35960623-35960695)
chr7 (16-68)||(4586456-4586508)
chr7 (17-90)||(4866526-4866606)
chr7 (17-88)||(46516527-46516597)
[»] chr1 (11 HSPs)
chr1 (20-89)||(19359064-19359133)
chr1 (20-89)||(24202986-24203055)
chr1 (20-89)||(19361654-19361723)
chr1 (20-89)||(19380294-19380363)
chr1 (17-88)||(13604839-13604909)
chr1 (17-67)||(27104584-27104635)
chr1 (17-88)||(32889249-32889320)
chr1 (17-54)||(47704153-47704190)
chr1 (17-88)||(29651620-29651691)
chr1 (17-73)||(21536785-21536841)
chr1 (17-89)||(40816949-40817021)
[»] scaffold0188 (2 HSPs)
scaffold0188 (20-88)||(24263-24331)
scaffold0188 (20-89)||(18170-18239)
[»] chr2 (19 HSPs)
chr2 (20-92)||(9296623-9296695)
chr2 (20-89)||(25403442-25403511)
chr2 (20-91)||(25398302-25398373)
chr2 (20-88)||(3491563-3491631)
chr2 (17-89)||(14291294-14291366)
chr2 (17-88)||(11099145-11099217)
chr2 (20-89)||(40738650-40738719)
chr2 (17-89)||(10445661-10445733)
chr2 (17-67)||(8039890-8039941)
chr2 (17-88)||(21629762-21629831)
chr2 (17-89)||(23078688-23078760)
chr2 (17-89)||(42039885-42039957)
chr2 (17-91)||(13569134-13569209)
chr2 (17-88)||(16940425-16940496)
chr2 (17-88)||(17011090-17011161)
chr2 (17-66)||(34682550-34682600)
chr2 (22-66)||(6266995-6267039)
chr2 (17-88)||(20522031-20522101)
chr2 (17-72)||(36757977-36758032)
[»] chr8 (22 HSPs)
chr8 (20-88)||(1262170-1262238)
chr8 (20-90)||(26287711-26287781)
chr8 (20-90)||(26312962-26313032)
chr8 (17-96)||(30655440-30655519)
chr8 (20-89)||(26300957-26301026)
chr8 (20-89)||(31071447-31071517)
chr8 (35-91)||(18870796-18870852)
chr8 (17-88)||(36979184-36979256)
chr8 (17-88)||(19752609-19752681)
chr8 (20-89)||(18853390-18853458)
chr8 (17-89)||(33038025-33038097)
chr8 (17-88)||(4760294-4760366)
chr8 (17-88)||(6311100-6311174)
chr8 (17-67)||(6127049-6127100)
chr8 (8-66)||(26403437-26403496)
chr8 (16-89)||(19175972-19176045)
chr8 (34-88)||(28307368-28307421)
chr8 (17-89)||(6813488-6813558)
chr8 (36-88)||(10015389-10015443)
chr8 (20-77)||(10689364-10689422)
chr8 (17-89)||(4455837-4455909)
chr8 (17-88)||(7290135-7290210)
[»] chr6 (8 HSPs)
chr6 (18-88)||(5674987-5675057)
chr6 (17-91)||(26258215-26258289)
chr6 (20-89)||(22708828-22708897)
chr6 (17-88)||(31936398-31936469)
chr6 (20-88)||(30126016-30126084)
chr6 (17-88)||(31086678-31086749)
chr6 (17-94)||(5572812-5572888)
chr6 (17-89)||(5017688-5017760)
[»] chr4 (12 HSPs)
chr4 (20-88)||(28468745-28468813)
chr4 (17-89)||(24741747-24741819)
chr4 (20-90)||(31985851-31985921)
chr4 (17-88)||(29760449-29760521)
chr4 (17-88)||(5112052-5112121)
chr4 (17-67)||(24333641-24333692)
chr4 (17-88)||(34496039-34496108)
chr4 (17-88)||(51520258-51520333)
chr4 (17-67)||(3796737-3796788)
chr4 (17-89)||(16624225-16624298)
chr4 (17-88)||(56146920-56146995)
chr4 (17-88)||(25862238-25862308)
[»] chr3 (17 HSPs)
chr3 (20-88)||(32143133-32143201)
chr3 (20-86)||(1309668-1309734)
chr3 (20-89)||(2671808-2671877)
chr3 (20-88)||(1305761-1305829)
chr3 (17-89)||(40373014-40373086)
chr3 (18-88)||(8477171-8477242)
chr3 (17-89)||(33386872-33386943)
chr3 (20-71)||(27452786-27452837)
chr3 (20-71)||(27986653-27986704)
chr3 (20-88)||(7167051-7167120)
chr3 (35-88)||(8739301-8739354)
chr3 (35-88)||(9091539-9091592)
chr3 (20-92)||(28504076-28504149)
chr3 (17-67)||(3716208-3716259)
chr3 (17-88)||(30709997-30710068)
chr3 (17-67)||(47649571-47649622)
chr3 (34-88)||(27026754-27026810)
[»] scaffold0978 (1 HSPs)
scaffold0978 (20-88)||(459-527)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-88)||(133496-133566)
[»] scaffold1805 (1 HSPs)
scaffold1805 (17-93)||(1212-1289)
[»] scaffold0140 (1 HSPs)
scaffold0140 (17-52)||(8635-8670)
[»] scaffold0184 (1 HSPs)
scaffold0184 (17-88)||(29706-29777)
[»] scaffold0148 (1 HSPs)
scaffold0148 (20-67)||(10558-10606)
[»] scaffold0078 (1 HSPs)
scaffold0078 (17-88)||(43067-43138)
[»] scaffold0036 (1 HSPs)
scaffold0036 (17-88)||(85495-85566)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 43362878 - 43363054
Alignment:
Q  89 aaaagtaatgctaagagctttccacatctgtacatatttgattatttgataccgtttctgaattgatagaagaattcgttaagcaattaagtcaa----- 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  43362878 aaaagtaatgctaagagcttcccacatctgtacatatttgattatttgataccgtttctgaattgatagaagaattcgttaagcaattaagtcaatatgt 43362977  T
Q  184 -------tatgttaaatagattatcaaagaatacaacaaaaagtgttataactcattagtgatcgaagaagtataat 253  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  43362978 ggttagttatgttaaatagattatcaaagaatacaacaaaaagtgttataactcattagtcatcgacgaaatataat 43363054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 15464414 - 15464342
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15464414 attgattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 15464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 35387542 - 35387474
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35387542 gattatcacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 38192051 - 38191983
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38192051 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 38219276 - 38219208
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38219276 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 24135727 - 24135659
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  24135727 gattaccactcccttttgctccacacatctttattttcattggtgtgagttttatccggattcacaaca 24135659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 36932565 - 36932619
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttt 71  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  36932565 attgattacctcttccttttgctccacacatctttgtttacattggtgtgagttt 36932619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3880184 - 3880133
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  3880184 attgattaccacttccttttgctccacacatctttgttattcattggtgtga 3880133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 31180133 - 31180078
Alignment:
Q  35 ttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||    
T  31180133 ttgctccacacatcattgttattcattggtgtgagtttcaaccggattcacaacaa 31180078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 1457370 - 1457445
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||| |||||||   |||||||||||||||  ||||||||||||||||    
T  1457370 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 1457445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 27444846 - 27444771
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||| |||||||   |||||||||||||||  ||||||||||||||||    
T  27444846 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 17004175 - 17004226
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtga 67  Q
    ||||||||||||| ||||||||||||||| |||||| ||| |||||||||||    
T  17004175 attgattaccacttccttttgctccacacctctttgtttttcattggtgtga 17004226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42126625 - 42126694
Alignment:
Q  19 tgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||| ||| |||||||||||    
T  42126625 tgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttatccgaattcacaacaa 42126694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14520110 - 14520038
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccgg-attcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||    
T  14520110 attgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttcaccggaattcacaacaa 14520038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27449690 - 27449614
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||| ||| |||||||   |||||||||||||||  |||||||||||||||||    
T  27449690 attgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaacaa 27449614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43598600 - 43598524
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||||||| |||||||   ||||||||||| |||  |||||||||||||||||    
T  43598600 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaacaa 43598524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43604092 - 43604016
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||||||| |||||||   ||||||||||| |||  |||||||||||||||||    
T  43604092 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaacaa 43604016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43609584 - 43609508
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||||||| |||||||   ||||||||||| |||  |||||||||||||||||    
T  43609584 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaacaa 43609508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 19588627 - 19588557
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||  ||| ||||||||||    
T  19588627 attgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 19588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21645886 - 21645817
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21645886 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 21645817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 21639688 - 21639610
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaaagtaatg 98  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||    
T  21639688 gattaccactcccttttgctccacacatctttgtttacattgatgtgagttttaatcggattcacaacacaatgtaatg 21639610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 18408644 - 18408575
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18408644 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18408575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 1533659 - 1533731
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1533659 attgattaccactatattttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaa 1533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 18413521 - 18413452
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18413521 gattaccacttccttttgctcctcacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18413452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 2580269 - 2580198
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||||||    
T  2580269 attgattaccacttccttttgctccacacatctttgtttacattggtgtga-ttttgtccgaattcacaacaa 2580198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 20357769 - 20357837
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  20357769 gattaccactatctcttgctccacacatctttgttttcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 2057834 - 2057765
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||  || |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  2057834 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggattcacaaca 2057765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 9190223 - 9190294
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||    
T  9190223 attgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttgaccgaattcacaaca 9190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 9185378 - 9185450
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||| |||| |||||||||||    
T  9185378 attgattaccacttccttttgctccacacatctttgtttttcattagtgtga-ttttgaccgaattcacaacaa 9185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 49091543 - 49091471
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||  |||| |||||||||||    
T  49091543 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgattttgtaccgaattcacaacaa 49091471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 3047116 - 3047062
Alignment:
Q  34 tttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||||||||||| ||||||||||| ||||  ||| |||||||||||    
T  3047116 tttgctccacacatctttgttttcattggtgtga-ttttgtccgaattcacaacaa 3047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29159684 - 29159633
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| || ||||||||||||||||||||| | |||||||||||    
T  29159684 attgattaccacttccctttgctccacacatctttgttattcattggtgtga 29159633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 35960695 - 35960623
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtga-gttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||| ||| |||||||||||  |||| |||| ||||||||||    
T  35960695 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattttttgaccgaattcacaaca 35960623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 4586456 - 4586508
Alignment:
Q  16 aattgattaccactcccttttgctccacacatctttgtttacattggtgtgag 68  Q
    ||||| ||||||||  | ||||||||||||||| | |||||||||||||||||    
T  4586456 aattggttaccactttcctttgctccacacatcatagtttacattggtgtgag 4586508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 4866606 - 4866526
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtga--gtttt--aaccggattcacaacaaa 90  Q
    |||||||||||||  || |||||||||||||| |||||||   |||||||||||  |||||  ||||||||||||||||||    
T  4866606 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaaggtttttgaaccggattcacaacaaa 4866526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 46516527 - 46516597
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||  ||| ||||||||||    
T  46516527 attgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 46516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19359064 - 19359133
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19359064 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 19359133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 24202986 - 24203055
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24202986 gattaccactcccttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaa 24203055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19361654 - 19361723
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19361654 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccagattcacaacaa 19361723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19380294 - 19380363
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19380294 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccagattcacaacaa 19380363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 13604839 - 13604909
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||||    
T  13604839 attgattatcacttccttttgctccacacatctttgtttacattggtgtga-ttttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27104584 - 27104635
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  27104584 attgattaccacttccttttgctccacacatctttgtttttcattggtgtga 27104635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 32889320 - 32889249
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||||| ||| ||||   |||||||||||||    
T  32889320 attgattatcactttcttttgctccacacatctttgttttcattggtatgatttttgtacggattcacaaca 32889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 47704153 - 47704190
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt 54  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  47704153 attgattaccacttccttttgctccacacatctttgtt 47704190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 29651691 - 29651620
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||  ||| ||||||||||    
T  29651691 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgatttttgtccgaattcacaaca 29651620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 21536785 - 21536841
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagtttta 73  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| |||||    
T  21536785 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgattttta 21536841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 40816949 - 40817021
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||  ||||  ||| |||||||||||    
T  40816949 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgttttttgtccgaattcacaacaa 40817021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 24263 - 24331
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 18170 - 18239
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18170 gattaccacttccttttgctccacacatctttgtttacattggtttgagttttaaccggattcacaacaa 18239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 9296623 - 9296695
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaaa 92  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9296623 gattaccactaccttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaaaaa 9296695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 25403511 - 25403442
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25403511 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttcaaccggattcacaacaa 25403442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 25398373 - 25398302
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaa 91  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  25398373 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttcaaccagattcacaacaaaa 25398302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 3491631 - 3491563
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  3491631 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 3491563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14291366 - 14291294
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  14291366 attgattaccactatctcttgctccacacacctttgttttcattggtgtgagttttaaccggattcacaacaa 14291294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 11099145 - 11099217
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  11099145 attgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggattcacaaca 11099217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 40738719 - 40738650
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||||||||    |||||||||||||    
T  40738719 gattaccacttccttttactccacacatctttatttacattggtgtgagttttgtagggattcacaacaa 40738650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10445661 - 10445733
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||  ||| |||||||||||    
T  10445661 attgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttgtccgaattcacaacaa 10445733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 8039941 - 8039890
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  8039941 attgattaccacttccttttgctccacacatctttgttattcattggtgtga 8039890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 21629831 - 21629762
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||  ||| ||||||||||    
T  21629831 attgattaccacttccttt-gctccacacatctttgttttcattggtgtga-ttttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23078688 - 23078760
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| ||||| | | |||||||||||    
T  23078688 attgattaccacttccttt-gctccacacatctttgtttttcattggtgtgatttttaccggaattcacaacaa 23078760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 42039885 - 42039957
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||| | | |||||||||||    
T  42039885 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgatttttaccggaattcacaacaa 42039957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 13569209 - 13569134
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccgg-attcacaacaaaa 91  Q
    ||||||||||||| |||||  ||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||||    
T  13569209 attgattaccacttccttta-ctccacacatctttgttattcattggtgtgattttttaccggaattcacaacaaaa 13569134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 16940425 - 16940496
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||  |||| ||||||||||    
T  16940425 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 17011090 - 17011161
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||  |||| ||||||||||    
T  17011090 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 34682550 - 34682600
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtg 66  Q
    |||||||||||||  ||||||||||||||||||||||| | ||||||||||    
T  34682550 attgattaccactttcttttgctccacacatctttgttattcattggtgtg 34682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 6266995 - 6267039
Alignment:
Q  22 ttaccactcccttttgctccacacatctttgtttacattggtgtg 66  Q
    ||||||||| | ||||||||||||||| | |||||||||||||||    
T  6266995 ttaccactctcctttgctccacacatcatagtttacattggtgtg 6267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 20522101 - 20522031
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| |||||| ||||||||||||||||| | ||||||||||| ||||  ||| ||||||||||    
T  20522101 attgattaccacttcctttt-ctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 20522031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 36757977 - 36758032
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagtttt 72  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||    
T  36757977 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgattttt 36758032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 1262170 - 1262238
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1262170 gattaccactcccttttactccacacatctttgttttcattggtgtgagttttaaccggattcacaaca 1262238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 26287781 - 26287711
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaa 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26287781 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 26313032 - 26312962
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaa 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26313032 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 30655519 - 30655440
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaaagtaa 96  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  30655519 attgattaccactatctcttgctccacacatctttgttttcattggtgtgagtttcaaccggattcacaacaataagtaa 30655440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 26301026 - 26300957
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  26301026 gattaccacttccttttgctccacgcatctttgtttacattggtgtgagttttatccgaattcacaacaa 26300957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31071447 - 31071517
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgag-ttttaaccggattcacaacaa 89  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  31071447 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttttatccgaattcacaacaa 31071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 18870796 - 18870852
Alignment:
Q  35 ttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaa 91  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18870796 ttgctccacacatctttgttttcattggtgtgagtttcaaccggattcacaacaaaa 18870852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 36979256 - 36979184
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  36979256 attgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 19752609 - 19752681
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg--tttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| |||| |||||||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttttttcattggtgtga-tttttaccggattcacaaca 19752681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 18853390 - 18853458
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||  || ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  18853390 gattaccactatctcttgctccacacatctttgttt-cgttggtgtgagtttcaaccggattcacaacaa 18853458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 33038025 - 33038097
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||||| || |||||||| || ||||||||    
T  33038025 attgattaccactatctcttgctccacacatctttgttttcattggtgttagatttaaccgcatccacaacaa 33038097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 4760294 - 4760366
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||  || | |||||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  4760294 attgattaccactatctctagctccacacatctttgtttttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 6311174 - 6311100
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||  |  |||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||    
T  6311174 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaaca 6311100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 6127100 - 6127049
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  6127100 attgattaccacttccttttgctccacacatctttgttattcattggtgtga 6127049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26403437 - 26403496
Alignment:
Q  8 acatcatcaattgattaccactcccttttgctccacacatctttgtt-tacattggtgtg 66  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  26403437 acattatctattgattaccacttccttttgctccacacatctttgttattcattggtgtg 26403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 19175972 - 19176045
Alignment:
Q  16 aattgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||| | | |||||||||||    
T  19175972 aattgattaccacttccttt-gctccacacatctttgttattcattggtgtgatttttaccagaattcacaacaa 19176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 28307421 - 28307368
Alignment:
Q  34 tttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||    
T  28307421 tttgctccacacatctttgttttcattggtgtga-ttttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 6813558 - 6813488
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||| |||| |||| |||||||||||||| ||||||||||| ||||  ||| |||||||||||    
T  6813558 attgattaccactcacttt-gctcaacacatctttgttttcattggtgtga-ttttgtccgaattcacaacaa 6813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 10015389 - 10015443
Alignment:
Q  36 tgctccacacatctttgtttacattggtgtgagttttaa--ccggattcacaaca 88  Q
    |||||||||||||||||||| ||||||||| ||||||||  ||| ||||||||||    
T  10015389 tgctccacacatctttgttttcattggtgtaagttttaaatccgaattcacaaca 10015443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10689364 - 10689422
Alignment:
Q  20 gattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccg 77  Q
    ||||||||||  || |||||||||||||||||| ||| ||||||||||||||| |||||    
T  10689364 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccg 10689422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 4455909 - 4455837
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||| | | ||||||||||| ||||||  | |||||||||||    
T  4455909 attgattaccacttccttt-gctccacacatctttgatattcattggtgtgatttttaagggaattcacaacaa 4455837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 7290135 - 7290210
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaaca 88  Q
    |||||||||||||  || ||||||||||||||  ||||||   |||||||||||||||  ||||||||||||||||    
T  7290135 attgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaaca 7290210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5674987 - 5675057
Alignment:
Q  18 ttgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5674987 ttgattaccactatcttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26258215 - 26258289
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaaa 91  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  26258215 attggttaccacttccttttgctccatacatctttgtttacattggtgtgagttttatccgaattcagaacaaaa 26258289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 22708897 - 22708828
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  22708897 gattaccactcccctttgcactacacatctttgtttatattggtgtgagttttatccggattcacaacaa 22708828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 31936469 - 31936398
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  31936469 attgattaccacttccttttgctccacacatctttgtttttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 30126016 - 30126084
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||| |||| ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  30126016 gattatcactacctcttgctccacacatctttgttttcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 31086678 - 31086749
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||  |||| ||||||||||    
T  31086678 attgattaccacttccttt-gctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaaca 31086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 5572812 - 5572888
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaaaaagt 94  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||  ||| |||||||||| |||||    
T  5572812 attgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaacacaaagt 5572888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 5017688 - 5017760
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | |||| |||||| ||||| | | |||||||||||    
T  5017688 attgattaccacttccttt-gctccacacatctttgttattcattagtgtgatttttaccggaattcacaacaa 5017760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 28468745 - 28468813
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  28468745 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 28468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 24741819 - 24741747
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  24741819 attgattaccactatctcttgctccacacatctttgttttcattggtgtgagtttcaaccggattcacaacaa 24741747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 31985851 - 31985921
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaaa 90  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  31985851 gattaccacttccttttgcaccacacatctttgtttacattggtgtgagttttgtccgaattcacaacaaa 31985921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 29760521 - 29760449
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  29760521 attgattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 5112121 - 5112052
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||    
T  5112121 attgattaccactcccttt-gctccacacatttttgttttcattggtgtga-ttttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 24333692 - 24333641
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  24333692 attgattaccacttccttttgctccacacatctttgttattcattggtgtga 24333641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 34496039 - 34496108
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  34496039 attgattaccgctaccttt-gctccacacatctttgttttcattggtgtga-ttttgaccgaattcacaaca 34496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 51520333 - 51520258
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||| |||||||   |||||||||||||||  ||||||||||||||||    
T  51520333 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 51520258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 3796737 - 3796788
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    |||||||| |||| |||||||||||||||||||||||| | |||||||||||    
T  3796737 attgattatcacttccttttgctccacacatctttgttattcattggtgtga 3796788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 16624225 - 16624298
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccgg-attcacaacaa 89  Q
    |||||||| |||| ||||| |||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||    
T  16624225 attgattatcacttccttt-gctccacacatctttgttattcattggtgtgattttttaccggaattcacaacaa 16624298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 56146920 - 56146995
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta---cattggtgtgagttt-taaccggattcacaaca 88  Q
    |||||||||||||  || |||||||||||||| |||||||   ||||||||||| |||  ||||||||||||||||    
T  56146920 attgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaaca 56146995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 25862238 - 25862308
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||  ||| ||||||||||    
T  25862238 attgattaccacttccttt-gctccacacatctttgttattcattggtgtga-ttttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 32143201 - 32143133
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  32143201 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 32143133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 1309734 - 1309668
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaa 86  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  1309734 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 1309668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2671808 - 2671877
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||  || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2671808 gattaccactatctcttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaa 2671877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 1305829 - 1305761
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  1305829 gattaccacttctttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 1305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 40373014 - 40373086
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    |||||||||||||  || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40373014 attgattaccactatctcttgctccacacacctttgttttcattggtgtgagttttaaccggattcacaacaa 40373086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 8477242 - 8477171
Alignment:
Q  18 ttgattaccactcccttttgctccacacatctttgtttacattggtgtgagtttta-accggattcacaaca 88  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttgttttcattggtgtgagttttataccggattcacaaca 8477171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 33386872 - 33386943
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 89  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  33386872 attgattaccacttccttttactccacacatctttgtttacattggtgtgag-tttgtccggattcacaacaa 33386943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 27452837 - 27452786
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttt 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27452837 gattaccacttccttttgctccacacatctttgtttacattggtgttagttt 27452786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 27986653 - 27986704
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttt 71  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  27986653 gattaccacttccttttgctccatacatctttgtttacattggtgtgagttt 27986704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7167120 - 7167051
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||  || |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  7167120 gattaccactatctcttgctccacacatctttgtttttcattggtgtgagtttcaaccggattcacaaca 7167051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 8739301 - 8739354
Alignment:
Q  35 ttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||    
T  8739301 ttgctccacacatctttgttttcattggtgtgagtctcaaccgaattcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 9091539 - 9091592
Alignment:
Q  35 ttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||    
T  9091539 ttgctccacacatctttgttttcattggtgtgagtctcaaccgaattcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 28504076 - 28504149
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaacaaaaa 92  Q
    ||||| |||| |||||||||||||||||| ||||| | ||||||||||||||   |||||||||||||||||||    
T  28504076 gattatcactaccttttgctccacacatcattgttattcattggtgtgagttaagaccggattcacaacaaaaa 28504149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 3716208 - 3716259
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  3716208 attgattaccacttccttttgctccacacatctttgttattcattggtgtga 3716259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 30709997 - 30710068
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||| | | ||||||||||    
T  30709997 attgattaccacttccttt-gctccacacatctttgttattcattggtgtgatttttaccggaattcacaaca 30710068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 47649622 - 47649571
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    ||||||||||||| ||||||| |||||||||||||||| | |||||||||||    
T  47649622 attgattaccacttccttttgttccacacatctttgttattcattggtgtga 47649571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 27026810 - 27026754
Alignment:
Q  34 tttgctccacacatctttgtt-tacattggtgtgagttttaaccgg-attcacaaca 88  Q
    ||||||||||||||||||||| | ||||||||||| |||| ||||| ||||||||||    
T  27026810 tttgctccacacatctttgttattcattggtgtgattttttaccggaattcacaaca 27026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 459 - 527
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  459 gattaccactatctcttgctccacacatctttgttttcattggtgtgagttttaaatggattcacaaca 527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 133496 - 133566
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 88  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||||    
T  133496 attgattatcacttccttttgctccacacatctttgtttacattggtgtga-ttttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 1289 - 1212
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg--tttacattggtgtgagttttaaccggattcacaacaaaaag 93  Q
    ||||||||||||| ||||| ||||||||||||||||  ||| ||||||||||| ||||| | | |||||||||||||||    
T  1289 attgattaccacttccttt-gctccacacatctttgttttttcattggtgtgatttttaccagaattcacaacaaaaag 1212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 8635 - 8670
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg 52  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8635 attgattaccacttccttttgctccacacatctttg 8670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 29706 - 29777
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| ||| ||||||| |||||||  ||||||||||| |||| |||| ||||||||||    
T  29706 attgattaccacttccttt-gcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 29777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 10606 - 10558
Alignment:
Q  20 gattaccactcccttttgctccacacatctttgtt-tacattggtgtga 67  Q
    |||||||||| | |||||||||||||||||||||| | |||||||||||    
T  10606 gattaccacttctttttgctccacacatctttgttattcattggtgtga 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 43138 - 43067
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttgttta-cattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| ||| ||||||| |||||||  ||||||||||| |||| |||| ||||||||||    
T  43138 attgattaccacttccttt-gcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 43067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 85566 - 85495
Alignment:
Q  17 attgattaccactcccttttgctccacacatctttg-tttacattggtgtgagttttaaccggattcacaaca 88  Q
    ||||||||||||| ||||| |||| ||||||||||| ||| ||||||||||| ||||| | | ||||||||||    
T  85566 attgattaccacttccttt-gctctacacatctttgtttttcattggtgtgatttttaccggaattcacaaca 85495  T

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