View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_21 (Length: 249)
Name: NF8549_low_21
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43315290 - 43315525
Alignment:
| Q |
1 |
tcacataccaaatagcctctgaaaaaagtttgaatcttcacagcagccaacatctccttgcttccaaataacaatgactttctgccactgccatggctta |
100 |
Q |
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| T |
43315290 |
tcacataccaaatagcctctgaaaaaagtttgaatcttcacagcagccaacatctctttgcttccaaataacaatgactttctgccactgccatggctta |
43315389 |
T |
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| Q |
101 |
atgacctcacaaaaattgcatttttgttatgctcattctgtttctgtttttcagcaacataggatttgtaccaagcatcatcaaaagctggagcactaat |
200 |
Q |
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| T |
43315390 |
atgacctcacaaaaattgcatttttgttatgctcattctgtttctgtttttcagcaacataggatttgtaccaagcatcatcaaaagctggagcactagt |
43315489 |
T |
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| Q |
201 |
ctgatggtcaatgtgattatcatccttccctgatct |
236 |
Q |
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| T |
43315490 |
ctgatggtcaatgtgattatcattcttccctgatct |
43315525 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 4609152 - 4609107
Alignment:
| Q |
3 |
acataccaaatagcctctgaaaaaagtttgaatcttcacagcagcc |
48 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
4609152 |
acataccaaatagcctctgaagaaagtttgaatctttacagcagcc |
4609107 |
T |
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