View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8549_low_23 (Length: 239)

Name: NF8549_low_23
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8549_low_23
NF8549_low_23
[»] chr4 (47 HSPs)
chr4 (8-224)||(27585605-27585821)
chr4 (8-220)||(27563357-27563569)
chr4 (30-224)||(27415563-27415754)
chr4 (47-224)||(27565958-27566135)
chr4 (31-224)||(27425752-27425945)
chr4 (31-224)||(27412610-27412797)
chr4 (75-205)||(27497348-27497478)
chr4 (47-224)||(27570056-27570233)
chr4 (31-224)||(27420348-27420541)
chr4 (56-217)||(27486948-27487109)
chr4 (132-224)||(27503963-27504055)
chr4 (92-224)||(27489961-27490093)
chr4 (75-224)||(27478890-27479039)
chr4 (75-224)||(27485950-27486099)
chr4 (75-212)||(27527145-27527282)
chr4 (56-220)||(27444805-27444969)
chr4 (132-224)||(27475586-27475678)
chr4 (72-220)||(27431159-27431307)
chr4 (56-220)||(27498380-27498544)
chr4 (120-224)||(27506727-27506831)
chr4 (56-220)||(27513787-27513951)
chr4 (132-224)||(27524565-27524657)
chr4 (123-220)||(27411467-27411564)
chr4 (127-224)||(27468334-27468431)
chr4 (56-217)||(27469425-27469586)
chr4 (127-224)||(27514927-27515024)
chr4 (56-224)||(27479866-27480034)
chr4 (120-220)||(27501346-27501446)
chr4 (56-220)||(27526123-27526287)
chr4 (122-221)||(27423253-27423352)
chr4 (56-217)||(27523417-27523578)
chr4 (123-220)||(27567287-27567384)
chr4 (120-224)||(27424521-27424625)
chr4 (56-220)||(27505713-27505877)
chr4 (72-217)||(27414318-27414463)
chr4 (135-224)||(27508896-27508985)
chr4 (56-220)||(27557454-27557618)
chr4 (66-149)||(27476662-27476745)
chr4 (56-211)||(27500358-27500513)
chr4 (123-220)||(27571655-27571752)
chr4 (180-220)||(27559251-27559291)
chr4 (123-217)||(27419085-27419179)
chr4 (175-224)||(27495620-27495669)
chr4 (123-195)||(27421971-27422043)
chr4 (114-220)||(27516620-27516726)
chr4 (146-220)||(27554364-27554438)
chr4 (75-220)||(27556390-27556535)
[»] chr5 (3 HSPs)
chr5 (75-224)||(1756764-1756913)
chr5 (122-224)||(1754719-1754821)
chr5 (120-149)||(1754323-1754352)
[»] chr3 (12 HSPs)
chr3 (72-220)||(38028777-38028925)
chr3 (72-220)||(38040092-38040240)
chr3 (120-220)||(38043932-38044032)
chr3 (72-224)||(50904799-50904951)
chr3 (72-208)||(38033802-38033938)
chr3 (136-220)||(38036804-38036888)
chr3 (120-220)||(55084815-55084915)
chr3 (120-211)||(50911889-50911980)
chr3 (120-220)||(38024886-38024986)
chr3 (120-220)||(38031338-38031438)
chr3 (120-220)||(50909989-50910089)
chr3 (72-220)||(48840723-48840870)
[»] chr8 (3 HSPs)
chr8 (57-220)||(21607307-21607470)
chr8 (72-220)||(21604765-21604913)
chr8 (155-211)||(21634607-21634663)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 27585605 - 27585821
Alignment:
Q  8 acctggtatcattagaaggtcatcatcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27585605 acctggtatcattagaaggtcatcatcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtgcgttggtgat 27585704  T
Q  108 aaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27585705 aaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaa 27585804  T
Q  208 tgggaggtctcaccatt 224  Q
    |||||||||||||||||    
T  27585805 tgggaggtctcaccatt 27585821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 27563569 - 27563357
Alignment:
Q  8 acctggtatcattagaaggtcatcatcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgat 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  27563569 acctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtggacgtgccaaagggctatcttgcagtgtacgttggagat 27563470  T
Q  108 aaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaa 207  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27563469 aaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaa 27563370  T
Q  208 tgggaggtctcac 220  Q
    |||| || |||||    
T  27563369 tgggtggcctcac 27563357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 27415563 - 27415754
Alignment:
Q  30 tcatcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatcc 129  Q
    ||||||||| || ||||||||  | |||||||||||||||| ||||||||||||||||| |||||||| |||||    ||||||||| ||||||||||||    
T  27415563 tcatcattttctgcaagccgagtaatttcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttgga---aaacaaaagcgatttgtgatcc 27415659  T
Q  130 ccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    || ||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||| | ||||| || |||||||||    
T  27415660 ccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccatt 27415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 27566135 - 27565958
Alignment:
Q  47 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaac 146  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||||||||| |||||||| |||||    
T  27566135 ccgagcagtttcaaaagttgtggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaac 27566036  T
Q  147 caaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    ||||||||||||||||| ||| |||  ||||  || ||||||  ||||||||||||||||||||| || |||||||||    
T  27566035 caaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctcaccatt 27565958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 27425752 - 27425945
Alignment:
Q  31 catcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccc 130  Q
    |||||||| || ||| |||||||| ||| |||| |||||||||||||||||||||||| ||||| || ||||| || ||||||||| | | |||||||||    
T  27425752 catcattttctgcaaaccgatcagcttcgaaagctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatccc 27425851  T
Q  131 cgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
      |||||||||||||||||||||  |||||||| || |||||||||   || ||||||||||||||||||||||| ||||| || |||||||||    
T  27425852 aatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcaccatt 27425945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 27412610 - 27412797
Alignment:
Q  31 catcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccc 130  Q
    |||||||| || ||| |||| |||||||||||| ||| ||| |||||||||||||| | || ||||| ||||| || ||||      | |||||||||||    
T  27412610 catcattttctgcaaaccgagcagtttcaaaagctgttgacatgccaaagggatatattgccgtgtatgttggagagaaac------ggtttgtgatccc 27412703  T
Q  131 cgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
      |||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  27412704 aatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcaccatt 27412797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 27497478 - 27497348
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    |||||||| ||| | |||||||| ||||| |||||||||||| | |||||||||||  | |||||||| |||||||||||||||||| ||||||||||||    
T  27497478 ccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtc 27497379  T
Q  175 aagccgaagaagagtttggatatgatcatcc 205  Q
    |||| || |||||||||||||||||||||||    
T  27497378 aagctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 27570233 - 27570056
Alignment:
Q  47 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaac 146  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||| || ||||| || ||||| | | | | ||||||||||||||||||||| | |    
T  27570233 ccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagc 27570134  T
Q  147 caaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    ||||| |  |||||||| ||| |||||||||| || |||||||| |||||||||||||| ||||| || |||||||||    
T  27570133 caaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccatt 27570056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 27420348 - 27420541
Alignment:
Q  31 catcatttacttcaagccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccc 130  Q
    |||||||| || ||| |||||||| |||||||  |||||||||||||||||||||||| ||||| || ||||| || ||||| | | | | | | |||||    
T  27420348 catcattttctgcaaaccgatcagcttcaaaatctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccc 27420447  T
Q  131 cgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||||||||||||| |||||| |  |||||||  ||| |||||||||  || ||||||||||||||||||||||| ||||| || |||||||||    
T  27420448 cgtatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccatt 27420541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 27486948 - 27487109
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||| || || |||   ||| | |||||||||||  |||||||||| |||||||||| |    
T  27486948 ttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcg 27487047  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtct 217  Q
    |||||||| |||||||  ||||| |||||| | |||| |||||||||||||||||| |||||    
T  27487048 tttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtct 27487109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 27503963 - 27504055
Alignment:
Q  132 gtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||||||||||||||||||| |  |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  27503963 gtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccatt 27504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 27489961 - 27490093
Alignment:
Q  92 agtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagttt 191  Q
    |||||| ||||| || ||||||||  | |||||  |||| || |||||||| ||| ||||||  |||||||||||||||| ||||||||| |||||||||    
T  27489961 agtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagttt 27490060  T
Q  192 ggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||||||||||||||||||| || |||||||||    
T  27490061 ggatatgatcatccaatgggtggcctcaccatt 27490093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 27479039 - 27478890
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    |||||||| ||| | |||||||| ||||| || ||||| ||| | |||||  ||||  ||||||||||||||||||||||||||||||| ||| |   ||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27478940  T
Q  175 aagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| |||||||| ||||||||||||||||| ||||| || |||||||||    
T  27478939 aagcggaagaagaatttggatatgatcatcccatgggtggcctcaccatt 27478890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 27486099 - 27485950
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    |||||||| ||| | |||||||| ||||| || ||||| ||| | |||||  ||||  ||||||||||||||||||||||||||||||| ||| |   ||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27486000  T
Q  175 aagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| |||||||| ||||||||||||||||| ||||| || |||||||||    
T  27485999 aagcggaagaagaatttggatatgatcatcccatgggtggcctcaccatt 27485950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 27527145 - 27527282
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    |||||||| ||||| || ||||| ||||| |||||||| ||  | |||||||||||  ||||| |||| |||||||||| ||||| ||| ||| ||||||    
T  27527145 ccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtc 27527244  T
Q  175 aagccgaagaagagtttggatatgatcatccaatggga 212  Q
    |||| || ||||||||||||||||||||||| ||||||    
T  27527245 aagctgaggaagagtttggatatgatcatcccatggga 27527282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27444969 - 27444805
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    ||||||||  ||||| ||||||||||||||||| ||||| |||||||| ||  ||   ||||| |||||||||||  |||||||||||| |||| |||      
T  27444969 ttcaaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatca 27444870  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||| || |||| ||||||||| ||| | || |||||||| ||||||||||| ||||||||    
T  27444869 tttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcac 27444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 27475678 - 27475586
Alignment:
Q  132 gtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||||||||||||| ||||| |  |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||    
T  27475678 gtatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccatt 27475586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 27431307 - 27431159
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||||||| | ||||| || ||||| ||| ||   ||||| |||||||||||  ||||||||||||||||||| |  |||||||| |||||||    
T  27431307 gtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttga 27431208  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
     ||||||||| ||| | ||||||||||| |||||||  || ||||||||    
T  27431207 atcaagccgaggaacaatttggatatgaccatccaaccggtggtctcac 27431159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 27498380 - 27498544
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    ||||||||  |||||| |||||||||||||||| ||||| || ||||| ||  ||   ||  | |||||||||||  ||||||||||||||||||||| |    
T  27498380 ttcaaaaggcgtggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcg 27498479  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    || ||||| |||||||  |||||||| ||| | || | |||||||||||||||||| ||||||||    
T  27498480 ttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcac 27498544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 27506727 - 27506831
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    |||||||||||  |||||||||| |||||||||||||||||||| ||| |   |||||| |||||||| ||||||||||||||||| ||||| || ||||    
T  27506727 tttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactca 27506826  T
Q  220 ccatt 224  Q
    |||||    
T  27506827 ccatt 27506831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27513951 - 27513787
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| ||| ||||||||||| |||||||| |||||||| || || || |||   ||| | |||||||||||  ||||||||||||||||| | | |    
T  27513951 ttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcg 27513852  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    || ||||| |||||||  ||||| |||||| | | || |||||||||||||||||| ||||||||    
T  27513851 ttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcac 27513787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 27524565 - 27524657
Alignment:
Q  132 gtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||||||| ||||||||||| |  |||||||| ||||||| |||||| || ||||||||||||||||||||||||||||| || |||||||||    
T  27524565 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccatt 27524657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 27411564 - 27411467
Alignment:
Q  123 gtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    ||||| || |||||||||||||||||||||| ||||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| ||||||||    
T  27411564 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcac 27411467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 27468431 - 27468334
Alignment:
Q  127 tccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| ||||||||||| |||||||| |  |||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  27468431 tccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccatt 27468334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 27469425 - 27469586
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||| || || |||   ||| | |||||||||||  ||||||| ||||| ||| |||      
T  27469425 ttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatca 27469524  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtct 217  Q
    || |||||  ||||||| ||||| |||||| | |||| |||||| ||||||||||| |||||    
T  27469525 ttacaagaactgttgagccaagctgaagaacaatttgaatatgaacatccaatgggtggtct 27469586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 27514927 - 27515024
Alignment:
Q  127 tccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| |||||||||||||| ||||| |  |||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  27514927 tccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccatt 27515024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 27479866 - 27480034
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| | ||||||||||||| || ||||| ||||| ||||| || || |||   ||| | |||||||| || |||||||||||||||||| |||      
T  27479866 ttcaaaaggtttggacgtgccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatca 27479965  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    || ||| | |||||||  ||||| || ||| | |||| |||||||||||||||||| ||||||||||||    
T  27479966 ttccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccatt 27480034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 27501346 - 27501446
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    |||||||||||  |||||||||| |||||||||||||||||||| |||||||  |||||||| ||| | |||| ||| |||||||||| ||| |||||||    
T  27501346 tttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctca 27501445  T
Q  220 c 220  Q
    |    
T  27501446 c 27501446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27526287 - 27526123
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| ||| || || |||||||||||||| |||||||| ||||| || |||   ||| | |||||||| || |||||||||||||||||| | |      
T  27526287 ttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctca 27526188  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    || ||||| |||||||| ||||| || ||| | |||| |||||||||||||| ||| ||||||||    
T  27526187 ttccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcac 27526123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 27423253 - 27423352
Alignment:
Q  122 tgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcacc 221  Q
    |||||||| | ||||||||||||||||||| |  |||||||| ||||||||||||||||| ||||||||||| ||  ||||||| ||||| || ||||||    
T  27423253 tgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 27423352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 27523578 - 27523417
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| ||||||||| |||||||| ||||| ||||||||||| || || |||   ||| | |||||||| || |||||||| ||||||||| | |      
T  27523578 ttcaaaagctgtggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttca 27523479  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtct 217  Q
    || ||||| ||||||||  ||||||| ||| | |||| |||||| ||||||||||| |||||    
T  27523478 ttccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtct 27523417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 27567287 - 27567384
Alignment:
Q  123 gtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    ||||| || |||||||||||||||||||||| ||||||||| ||  | | |||| | |||||||| ||||| ||||||||||||||||| ||||||||    
T  27567287 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcac 27567384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 27424625 - 27424521
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    |||||||| || |||||||||||||||||||| |  |||||||| ||| | | |||| | |||||||| | ||||||||||||||||||||| ||||| |    
T  27424625 tttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtctta 27424526  T
Q  220 ccatt 224  Q
    |||||    
T  27424525 ccatt 27424521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 27505877 - 27505713
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||| | |||| ||||||||||| ||||| ||||||||||| || || |||   ||| | |||||||| || |||||||||||||||||| | |      
T  27505877 ttcaaaaggtttggaggtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctca 27505778  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    || ||||| |||||||  ||||| || ||| | |||| |||||| ||||||||||| ||||||||    
T  27505777 ttccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcac 27505713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 27414463 - 27414318
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaaga-gatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttg 170  Q
    |||||||| || ||||| ||||| |||||||| |||||| |  ||| | |||||||| || |||||||||||||||||||| |  |||||||| ||  |     
T  27414463 gtgccaaaaggctatcttgcagtctacgttggagataaa-atgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattacta 27414365  T
Q  171 agtcaagccgaagaagagtttggatatgatcatccaatgggaggtct 217  Q
    | |||| | |||||||| ||||||||||||||||||||||| |||||    
T  27414364 aatcaatcagaagaagaatttggatatgatcatccaatgggtggtct 27414318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 27508896 - 27508985
Alignment:
Q  135 tcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    ||||| ||||||||||| |  |||||||| ||||||| ||| || || ||||||||||||||||||||||||| ||| || |||||||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccatt 27508985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 27557454 - 27557618
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||| | |||||| ||||||| ||||||||| || || || ||||| ||  ||   ||||| |||||||||||  | |||||||| ||||||||||      
T  27557454 ttcaaagggtgtggatgtgccaaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatca 27557553  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||| ||| ||| |||||| || ||| | |||| ||||| |||||||||||| ||||||||    
T  27557554 tttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcac 27557618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 27476662 - 27476745
Alignment:
Q  66 gtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaa 149  Q
    |||||||| |||||||||||||| |||||||| |||||||| |||   ||| | |||||||| || ||||||||||||||||||    
T  27476662 gtggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27476745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 27500513 - 27500358
Alignment:
Q  56 ttcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattg 155  Q
    |||||||  ||||||||| ||||| |||||||| ||||||||||| || || |||   ||| |||||||||||||  |||||||||| ||||||   |      
T  27500513 ttcaaaatctgtggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttca 27500414  T
Q  156 tttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatggg 211  Q
    || ||||| ||| |||| ||| | |||||| |||| |||||||| |||||||||||    
T  27500413 ttccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatggg 27500358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 27571655 - 27571752
Alignment:
Q  123 gtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    ||||| || |||||||| |||| ||| |||| ||||||||| ||  | | |||| | |||||||| ||||||||||||||||||||||| ||||||||    
T  27571655 gtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcac 27571752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 27559291 - 27559251
Alignment:
Q  180 gaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  27559291 gaagaagagtttggatatgatcatccaatgggtggtctcac 27559251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 27419179 - 27419085
Alignment:
Q  123 gtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtct 217  Q
    ||||| || |||||||| |||| ||| |||| ||||||||| ||  | | |||| | |||||||| ||||||||||||||||||||||| |||||    
T  27419179 gtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtct 27419085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 27495620 - 27495669
Alignment:
Q  175 aagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| |||||||||||||||| | ||||||||||||| ||||||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccatt 27495669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 27422043 - 27421971
Alignment:
Q  123 gtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggat 195  Q
    ||||| || ||||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| |||||||    
T  27422043 gtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggat 27421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 27516726 - 27516620
Alignment:
Q  114 aagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggag 213  Q
    |||||||||||||||||  ||||||| ||||| |||  ||  || ||||| |||||||  ||||| || ||| | |||| |||||| ||||||||||| |    
T  27516726 aagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggg 27516627  T
Q  214 gtctcac 220  Q
    |||||||    
T  27516626 gtctcac 27516620  T

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Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 27554364 - 27554438
Alignment:
Q  146 ccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||| ||||||||| ||| ||| |||||| || ||| | ||||||||||||||||||| |||  |||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcac 27554438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 27556535 - 27556390
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    ||||| || ||||||||||| || ||||| || |||   ||| |||||||||| ||| | ||||  ||||||||||| |  |||||||| ||  |   ||    
T  27556535 ccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatc 27556436  T
Q  175 aagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||| |||||||| ||||||||||||||| | ||||| ||||||||    
T  27556435 aagcagaagaagaatttggatatgatcattctatgggtggtctcac 27556390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 1756913 - 1756764
Alignment:
Q  75 ccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtc 174  Q
    |||||||| ||||| |||||| | ||||| || ||||| ||| | |||||||||||  ||||||||||||||||||||| ||||||| | ||||||||||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  175 aagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    |||| |||||||| |||||||||||||| || ||||| || |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccatt 1756764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 1754719 - 1754821
Alignment:
Q  122 tgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcacc 221  Q
    |||||||||  ||||||||||||| ||||||| |||||||   |||||||||||||| |  ||||||||||||||||||||||||||||| || ||||||    
T  1754719 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcacc 1754818  T
Q  222 att 224  Q
    |||    
T  1754819 att 1754821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 1754352 - 1754323
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaa 149  Q
    ||||||||||||||||||||||||||||||    
T  1754352 tttgtgatccccgtatcatacttgaaccaa 1754323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 38028925 - 38028777
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||| ||||| |||||||||||||| ||  ||   ||| ||||||| ||||||   ||||||||||||||| | |  |||||| |  ||||||    
T  38028925 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttga 38028826  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||||| ||||| ||||||||||| ||||||||||| || |||||    
T  38028825 gtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcac 38028777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 38040240 - 38040092
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||| ||||| |||||||||||||| ||  ||   ||| ||||||| ||||||   ||||||||||||||| | |  |||||| |  ||||||    
T  38040240 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttga 38040141  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||||| ||||| || |||||||| ||||||||||| || |||||    
T  38040140 gtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcac 38040092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 38043932 - 38044032
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    |||||||||||  | ||||||||||| ||| | | ||||||||| ||| |||||||||| || ||||| ||||||||||||||||||||||| || ||||    
T  38043932 tttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctca 38044031  T
Q  220 c 220  Q
    |    
T  38044032 c 38044032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 50904951 - 50904799
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||||||||| |||||||||||||| ||  ||   ||| | ||||||||||   | || |||||||||||| | |  |||||||| |||||||    
T  50904951 gtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttga 50904852  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccatt 224  Q
    ||| ||| || || || || |||||||||||||||||||| || |||||||||    
T  50904851 gtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccatt 50904799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 38033938 - 38033802
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||| ||||| ||||||||| |||| ||  ||   ||| | ||||| ||||||   ||||||||||||||| | |  |||||| | |||||||    
T  38033938 gtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttga 38033839  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaat 208  Q
    |||||||||| ||||| ||||||||||| ||||||||    
T  38033838 gtcaagccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 38036888 - 38036804
Alignment:
Q  136 catacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||||||||||| | |  |||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||| || |||||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcac 38036804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 55084815 - 55084915
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    |||||||||||  | || ||||||||||||||||  |||||||| ||||||||||  || || ||||| |||||||| |||||||||||||| || ||||    
T  55084815 tttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctca 55084914  T
Q  220 c 220  Q
    |    
T  55084915 c 55084915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 50911980 - 50911889
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatggg 211  Q
    ||||||||||||   ||||||||||||||| | |  |||||| | |||||||||||||| || ||||| |||||||||||||| ||||||||    
T  50911980 tttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatggg 50911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 38024986 - 38024886
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    ||||| |||||| | ||||||||||||||| | |  |||||| | || ||||||||||| || ||||| |||||||||||||| |||||||| || ||||    
T  38024986 tttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctca 38024887  T
Q  220 c 220  Q
    |    
T  38024886 c 38024886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 38031438 - 38031338
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    ||||| |||||| | ||||||||||||||| | |  |||||| | || ||||||||||| || ||||| |||||||||||||| |||||||| || ||||    
T  38031438 tttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctca 38031339  T
Q  220 c 220  Q
    |    
T  38031338 c 38031338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 50909989 - 50910089
Alignment:
Q  120 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 219  Q
    ||||| |||||| | ||||||||||||||| | |  |||||| | ||||||| |||||  || ||||| ||||||||||||||||||||||| || ||||    
T  50909989 tttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctca 50910088  T
Q  220 c 220  Q
    |    
T  50910089 c 50910089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 48840870 - 48840723
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||||||||| ||| ||||||| || ||  |    ||| ||||||| |||||| |  |||||||||||||| | |  |||||||| |||||||    
T  48840870 gtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttga 48840771  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    || |||  ||  |||| ||||||||||||||||||||||| || |||||    
T  48840770 gt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcac 48840723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 21607470 - 21607307
Alignment:
Q  57 tcaaaagttgtggacgtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgt 156  Q
    |||||||||||| | || |||||||||||||| || || || ||||| ||  ||   ||| | ||||| |||||| | ||||||||||||| | | |  |    
T  21607470 tcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcct 21607371  T
Q  157 ttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    ||||| | || ||||||||||| || ||||| |||||||||||||| |||||||| || |||||    
T  21607370 ttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcac 21607307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 21604913 - 21604765
Alignment:
Q  72 gtgccaaagggatatctcgcagtgtacgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgttga 171  Q
    ||||||||||| ||||| |||||||| || || ||  ||   ||| ||||||| ||||||   ||||||||||||||| | |  |||||| |  ||||||    
T  21604913 gtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttga 21604814  T
Q  172 gtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcac 220  Q
    |||||| ||| ||||| || |||||||| ||||||||||| || |||||    
T  21604813 gtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcac 21604765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 21634607 - 21634663
Alignment:
Q  155 gtttcaagatttgttgagtcaagccgaagaagagtttggatatgatcatccaatggg 211  Q
    ||||||||| ||| |||||||||| || ||||| |||||||||||||||| ||||||    
T  21634607 gtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatggg 21634663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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