View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_25 (Length: 239)
Name: NF8549_low_25
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43314975 - 43314755
Alignment:
| Q |
1 |
tgaatgaaacagtacatctttcatttttagtatcatcatcgaatgcaaacatattgttgtgctatagtattgtagtgtgttctgttagcaattcaattca |
100 |
Q |
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| T |
43314975 |
tgaatgaaacagtacatctttcatttttagtatcatcatctaatgcaaacatattgttgtgctatagtattgtagtgtgttctgttagcaattcaattca |
43314876 |
T |
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| Q |
101 |
aattttgtatcatttgttgcattcaggcgcgaaaggctcgtagagcactaaaaggattggttaagatccaagctcttgttagagggttcctagttagaaa |
200 |
Q |
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| T |
43314875 |
aattttgtatcatttgttgcattcaggcgcgaaaggctcgtagagcactaaaaggattggttaggatccaagctcttgttagagggttcctagttagaaa |
43314776 |
T |
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| Q |
201 |
aagagtttctgcaacacttca |
221 |
Q |
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| T |
43314775 |
aagagttgcagcaacacttca |
43314755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 4609627 - 4609716
Alignment:
| Q |
133 |
aaggctcgtagagcactaaaaggattggttaagatccaagctcttgttagagggttcctagttagaaaaagagtttctgcaacacttcac |
222 |
Q |
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| T |
4609627 |
aaggctcttagagcattgaaaggattggttaagatacaagctcttgttagaggctatcttgttagaaaaagagctgctgcaactcttcac |
4609716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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