View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_30 (Length: 207)
Name: NF8549_low_30
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 35189369 - 35189544
Alignment:
| Q |
19 |
acacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagagtgggaaatt |
118 |
Q |
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| T |
35189369 |
acacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagagtgggaaatt |
35189468 |
T |
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| Q |
119 |
gatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatg |
194 |
Q |
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| T |
35189469 |
gatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatg |
35189544 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 43970824 - 43970907
Alignment:
| Q |
110 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgat |
193 |
Q |
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| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgat |
43970907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 1663755 - 1663844
Alignment:
| Q |
105 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatg |
194 |
Q |
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| T |
1663755 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatg |
1663844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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