View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8549_low_4 (Length: 465)
Name: NF8549_low_4
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 216 - 447
Target Start/End: Complemental strand, 38965681 - 38965450
Alignment:
| Q |
216 |
ttagttgctcaatgtaaaccaaatcatgagccacatgctcaatgaaaatgtaatcattggcgtggcgtgctccttgaaaaaattagtacatctacgtcat |
315 |
Q |
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| T |
38965681 |
ttagttgctcaatgtaatccaaatcatgagccatatgctcaatgaaaatgtaatcattggtgtggcgtgctccttgaaaaaattagtacatctacttcat |
38965582 |
T |
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| Q |
316 |
atatgaattgcagagatcaaagtaatattgctcatcacttaccctgcaatttagacatgcgtatatggccatcaaaggttag-cttttaacagtcatgtt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
38965581 |
atatgaattgcagagatcaaagtaatattgctcatcacttaccctgcaatttagacatgcgtatatggccatcaaag-ttagtcttttaacagtcatgtt |
38965483 |
T |
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| Q |
415 |
atatgttcatacaatataattcataccttattt |
447 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38965482 |
atatgttcatacaatataattcataccttattt |
38965450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 38966159 - 38965973
Alignment:
| Q |
34 |
cttgctcttaagaagcttccataattcaactcttcgtacatgattacttcaactctccttagtaaataacatcttttttatctgcaattgtactactttt |
133 |
Q |
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| T |
38966159 |
cttgctcttaagaagcttccataattcaactcttcttacatgattacttcaactctccttagtaagtaacatattttttatctgcaattgtactactttt |
38966060 |
T |
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| Q |
134 |
gcaaattctaattcaagcctcatgttctgtcatctcattgttttaccagaaattccaattgtaaccggtttaatttgatttcttagt |
220 |
Q |
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| T |
38966059 |
gctaattctaattcaagcctcatgttctgtcatctcattgttttaccagaaattccaattgtaaccagtttaatttgatttcttagt |
38965973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 15006218 - 15006328
Alignment:
| Q |
77 |
ttacttcaactctccttagtaaataacatcttttttatctgcaattgtactacttttgcaaattctaattcaagcctcatgttctgtcatctcattgttt |
176 |
Q |
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|||||||||| |||||| ||||| |||||||||||||| ||||||| |||||||||| || ||||||||||||| ||||||||||||||||| ||| |
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| T |
15006218 |
ttacttcaacactccttggtaaacaacatcttttttatatgcaatttagctacttttgctaaatctaattcaagccaattgttctgtcatctcattattt |
15006317 |
T |
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| Q |
177 |
taccagaaatt |
187 |
Q |
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|||||| |||| |
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| T |
15006318 |
taccagtaatt |
15006328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 52590316 - 52590427
Alignment:
| Q |
70 |
tacatgattacttcaactctccttagtaaataacatcttttttatctgcaattgtactacttttgcaaattctaattcaagcctcatgttctgtcatctc |
169 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||| ||||| | | | ||||||||| |||||||||| ||||| |
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| T |
52590316 |
tacatgattacttcaacattccttggtaaataacat-ttttttagctgcaattgtactacatttgctgactatgattcaagccacatgttctgtgatctc |
52590414 |
T |
|
| Q |
170 |
attgttttaccag |
182 |
Q |
| |
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|||||||||||| |
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| T |
52590415 |
tttgttttaccag |
52590427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 35693183 - 35693069
Alignment:
| Q |
64 |
tcttcgtacatgattacttcaactctccttagtaaataacatcttttttatctgcaattgtactacttttgcaaattctaattcaagcctcatgttctgt |
163 |
Q |
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||||| ||||||||||||||| | |||||| | |||||||||||||| | |||||||||| ||||| ||| | |||||||||||| |||||||| | |
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| T |
35693183 |
tcttcatacatgattacttcagcactccttggaaaataacatcttttgcagctgcaattgtgctactactgcttactctaattcaagctacatgttctat |
35693084 |
T |
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| Q |
164 |
catctcattgtttta |
178 |
Q |
| |
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|||||||| ||||| |
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| T |
35693083 |
tatctcattatttta |
35693069 |
T |
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