View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8549_low_5 (Length: 420)

Name: NF8549_low_5
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8549_low_5
NF8549_low_5
[»] chr1 (15 HSPs)
chr1 (15-403)||(5923948-5924335)
chr1 (123-169)||(25479581-25479627)
chr1 (123-168)||(22810653-22810698)
chr1 (176-225)||(27807210-27807259)
chr1 (125-169)||(28262643-28262687)
chr1 (123-170)||(39803914-39803962)
chr1 (164-227)||(5157155-5157218)
chr1 (126-169)||(37241846-37241889)
chr1 (123-169)||(15558217-15558263)
chr1 (126-164)||(50319273-50319311)
chr1 (123-169)||(51929799-51929845)
chr1 (123-160)||(33527180-33527217)
chr1 (123-168)||(33976686-33976731)
chr1 (164-227)||(15361796-15361857)
chr1 (123-167)||(15515541-15515585)
[»] chr6 (6 HSPs)
chr6 (123-169)||(2117403-2117449)
chr6 (122-169)||(316835-316882)
chr6 (291-358)||(29468093-29468160)
chr6 (123-169)||(1275149-1275195)
chr6 (171-225)||(13908330-13908384)
chr6 (165-219)||(32171551-32171605)
[»] chr8 (11 HSPs)
chr8 (123-166)||(30627929-30627972)
chr8 (123-169)||(31862493-31862539)
chr8 (130-169)||(8535794-8535833)
chr8 (176-227)||(14926906-14926957)
chr8 (125-168)||(26473777-26473820)
chr8 (122-169)||(30277269-30277316)
chr8 (123-169)||(8060669-8060715)
chr8 (123-169)||(34551120-34551166)
chr8 (191-225)||(43208082-43208116)
chr8 (123-167)||(4558798-4558842)
chr8 (123-167)||(29973081-29973125)
[»] chr5 (11 HSPs)
chr5 (130-169)||(36638754-36638793)
chr5 (123-169)||(37588384-37588430)
chr5 (195-227)||(34205355-34205387)
chr5 (124-167)||(17777910-17777953)
chr5 (123-169)||(15074773-15074819)
chr5 (123-169)||(37526223-37526269)
chr5 (123-168)||(40534199-40534244)
chr5 (123-167)||(15003540-15003584)
chr5 (195-227)||(17369317-17369349)
chr5 (125-169)||(40205098-40205142)
chr5 (164-220)||(40534282-40534338)
[»] chr2 (5 HSPs)
chr2 (176-227)||(43456631-43456682)
chr2 (123-169)||(22681209-22681255)
chr2 (123-168)||(10884546-10884591)
chr2 (128-169)||(24097813-24097854)
chr2 (124-169)||(44438863-44438908)
[»] chr7 (10 HSPs)
chr7 (123-169)||(2825255-2825301)
chr7 (123-167)||(20553103-20553147)
chr7 (134-169)||(8690422-8690457)
chr7 (122-153)||(19624218-19624249)
chr7 (164-227)||(22387820-22387883)
chr7 (123-169)||(24363625-24363671)
chr7 (123-169)||(38010714-38010760)
chr7 (122-168)||(39542325-39542371)
chr7 (171-227)||(22283570-22283625)
chr7 (123-167)||(29363518-29363562)
[»] chr4 (8 HSPs)
chr4 (123-169)||(26747426-26747472)
chr4 (123-168)||(11264301-11264346)
chr4 (123-169)||(7694034-7694080)
chr4 (123-169)||(11158381-11158427)
chr4 (123-169)||(42866068-42866114)
chr4 (162-227)||(19429394-19429459)
chr4 (127-167)||(8468952-8468992)
chr4 (195-227)||(15173227-15173259)
[»] chr3 (9 HSPs)
chr3 (123-169)||(237397-237443)
chr3 (123-169)||(14548745-14548791)
chr3 (125-167)||(30322046-30322088)
chr3 (123-169)||(51510217-51510263)
chr3 (122-169)||(41644469-41644516)
chr3 (123-169)||(22214683-22214729)
chr3 (174-227)||(45541664-45541717)
chr3 (124-168)||(24158528-24158572)
chr3 (174-226)||(31064722-31064774)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 5923948 - 5924335
Alignment:
Q  15 tactaaacagggcttagataagtttaaataagacaatccaaacatacagnnnnnnnnnttgaaaagtacatagaggaaaatatgtctaacccctttttgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||| ||||    
T  5923948 tactaaacagggcttagataagtttaaataagacaatccaaacatacagaaaaaaaa-ttgaaaagtacatagaggaaaatatgtctaaccccttcttgt 5924046  T
Q  115 aatgagaatataagttgttttcataagttatcctagagatcttatggaaataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttca 214  Q
     |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5924047 gatgaaaatataagttgttttcataagttatcctagagagcttatggaaataagcactcctaaacagtcttacaaatgcgtatgtcagtaaataagttca 5924146  T
Q  215 aataagtcaatcccaattcaaatataccctaatagtaatgactagaataggaaaagcaaaaaattgtaagaatctaacccatttttgtaatgaaatccag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5924147 aataagtcaatcccaattcaaatataccctaatagtaatgactagaataggaaaagcaaaaaattgtaagaatctaacccatttttgtaatgaaatccag 5924246  T
Q  315 ctaaattagcaacttggtaaagacccttcttccatttctccaacctatcaacatcatcactatacctaacctcatgaacagacatagct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5924247 ctaaattagcaacttggtaaagacccttcttccatttctccaacctatcaacatcatcactatacctaacctcatgaacagccatagct 5924335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 25479581 - 25479627
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataagc 25479627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 22810698 - 22810653
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||    
T  22810698 tataagttgttttcataagttatcatagagaacttacggaaataag 22810653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 27807210 - 27807259
Alignment:
Q  176 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaat 225  Q
    |||||||||||||||||  |||||||||| | ||||||||||||||||||    
T  27807210 aaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaat 27807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 28262687 - 28262643
Alignment:
Q  125 taagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||    
T  28262687 taagctgttttcataagttatcctatagaacttatggaaataagc 28262643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 39803962 - 39803914
Alignment:
Q  123 tataagttgttttcataa-gttatcctagagatcttatggaaataagca 170  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||    
T  39803962 tataagttgttttcataatgctatcctagagattttatggaaataagca 39803914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 5157155 - 5157218
Alignment:
Q  164 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||| |||| ||||||| | |||| ||| |||||| ||| ||||||||||||||||||||||    
T  5157155 ataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatcc 5157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 37241889 - 37241846
Alignment:
Q  126 aagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||    
T  37241889 aagttgttttcataagatatcctagagagcttatgaaaataagc 37241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 15558217 - 15558263
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||||| ||||||||||| ||||| |||||||||    
T  15558217 tataagctgttttcataagatatcctagagaacttatagaaataagc 15558263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 50319273 - 50319311
Alignment:
Q  126 aagttgttttcataagttatcctagagatcttatggaaa 164  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  50319273 aagttgttttcataagctatcctagagagcttatggaaa 50319311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 51929845 - 51929799
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  51929845 tataagctgttttcataagctattctagagagcttatggaaataagc 51929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 33527217 - 33527180
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatg 160  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  33527217 tataagctgttttcataagttatcctcgagatcttatg 33527180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 33976686 - 33976731
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    |||||||||||||| |||  ||||||||||| ||||||||||||||    
T  33976686 tataagttgttttcttaacctatcctagagagcttatggaaataag 33976731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 15361796 - 15361857
Alignment:
Q  164 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||| || ||||||||||  |||||||  |||| ||||||||||||||||||||||| ||||    
T  15361796 ataagctcttctaaacagtc--acaaatgcttatgacagtaaataagttcaaataagtcgatcc 15361857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 15515541 - 15515585
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    |||||||||||||||||||||||| | || | |||||||||||||    
T  15515541 tataagttgttttcataagttatcatggatagcttatggaaataa 15515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 2117403 - 2117449
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  2117403 tataagttgttttcataagttatcctagagagcttattgaaataagc 2117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 316882 - 316835
Alignment:
Q  122 atataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||||||| || ||||| || ||||||||    
T  316882 atataagttgttttcataagttatccttgaaatcttctgcaaataagc 316835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 29468160 - 29468093
Alignment:
Q  291 acccatttttgtaatgaaatccagctaaattagcaacttggtaaagacccttcttccatttctccaac 358  Q
    ||||||||||| ||||||| ||||  ||||||||||||||||  ||| | ||||||||||||| ||||    
T  29468160 acccatttttgaaatgaaagccagacaaattagcaacttggttcagagcattcttccatttctgcaac 29468093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 1275149 - 1275195
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||| |||||||| |||| |||||||||||||||    
T  1275149 tataagctgttttcatatgttatcctggagagcttatggaaataagc 1275195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 13908330 - 13908384
Alignment:
Q  171 ctcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaat 225  Q
    |||||||| ||| | |||| ||| |||||||||| ||||||||||||||||||||    
T  13908330 ctcctaaagagtgtcacaagtgtttatgtcagtagataagttcaaataagtcaat 13908384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 32171551 - 32171605
Alignment:
Q  165 taagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataa 219  Q
    ||||| |||| || |||||| |||||||  |||||||||||||||||||||||||    
T  32171551 taagctctcccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 30627972 - 30627929
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaata 166  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  30627972 tataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 31862493 - 31862539
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||    
T  31862493 tataagatgttttcataagttatcctagagagcttatgaaaataagc 31862539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 8535833 - 8535794
Alignment:
Q  130 tgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  8535833 tgttttcataaattatcctagagagcttatggaaataagc 8535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 14926957 - 14926906
Alignment:
Q  176 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    ||||||||| |||| ||  |||| ||||||||||||||||||||||||||||    
T  14926957 aaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatcc 14926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 26473820 - 26473777
Alignment:
Q  125 taagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataag 26473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 30277316 - 30277269
Alignment:
Q  122 atataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||| |||||||||||| |||||||||||  ||||||||||||||    
T  30277316 atataagctgttttcataagctatcctagagagtttatggaaataagc 30277269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 8060669 - 8060715
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||    
T  8060669 tataagctgttttcataagcaatcctagagagcttatggaaataagc 8060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 34551120 - 34551166
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||| ||||||||||| |||| |||||| ||||||||    
T  34551120 tataagttgttttcttaagttatcctggagagcttatgaaaataagc 34551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 43208116 - 43208082
Alignment:
Q  191 tgtgtatgtcagtaaataagttcaaataagtcaat 225  Q
    |||||||||||||| ||||||||||||||||||||    
T  43208116 tgtgtatgtcagtagataagttcaaataagtcaat 43208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 4558798 - 4558842
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    |||||| ||||| |||||| ||||||||||| |||||||||||||    
T  4558798 tataagctgtttccataagctatcctagagagcttatggaaataa 4558842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 29973081 - 29973125
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||||||||||||||| |||||| ||||  ||||||||||||    
T  29973081 tataagttgttttcataagctatccttgagagtttatggaaataa 29973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 36638754 - 36638793
Alignment:
Q  130 tgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  36638754 tgttttcataagttatcctagagagcttatggaaataagc 36638793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 37588430 - 37588384
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  37588430 tataagttgttttcataagttattctggagagcttatggaaataagc 37588384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 34205355 - 34205387
Alignment:
Q  195 tatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||||||||||||||||||||||||||    
T  34205355 tatgtcagtaaataagttcaaataagtcaatcc 34205387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 17777910 - 17777953
Alignment:
Q  124 ataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||    
T  17777910 ataagttgttttcataagttatcctggagagcttatcgaaataa 17777953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 15074819 - 15074773
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||| || || | |||||||||||||||    
T  15074819 tataagttgttttcataagttatactggaaagcttatggaaataagc 15074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 37526269 - 37526223
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||| | || |||| |||||||||||||||    
T  37526269 tataagttgttttcataagttgttctggagagcttatggaaataagc 37526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 40534199 - 40534244
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||||    
T  40534199 tataagttgttttcataagctatcccagagagcttatggaagtaag 40534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 15003584 - 15003540
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  15003584 tataagtggttttcataagctatccaagagagcttatggaaataa 15003540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 17369317 - 17369349
Alignment:
Q  195 tatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||| ||||||||||||||||||||||    
T  17369317 tatgtcagtagataagttcaaataagtcaatcc 17369349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 40205142 - 40205098
Alignment:
Q  125 taagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||| |||||| |||| ||||| |||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagc 40205098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 40534282 - 40534338
Alignment:
Q  164 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataag 220  Q
    |||||| |||||||||||| | |||| ||| |||||||||||||||  |||||||||    
T  40534282 ataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataag 40534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 43456682 - 43456631
Alignment:
Q  176 aaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||| |||||    
T  43456682 aaacagtcttacaagtgtttatgtgagtaaataagttcaaataagtaaatcc 43456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 22681255 - 22681209
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  22681255 tataagctgttttcataatctatcctagagaacttatggaaataagc 22681209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 10884591 - 10884546
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 24097813 - 24097854
Alignment:
Q  128 gttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||| |||| |||||| ||||||||    
T  24097813 gttgttttcataagttatcctggagagcttatgaaaataagc 24097854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 44438908 - 44438863
Alignment:
Q  124 ataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||| ||| ||||||||||||||| |||||||| |||||||||||    
T  44438908 ataagctgtcttcataagttatcctggagatcttgtggaaataagc 44438863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 2825301 - 2825255
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  2825301 tataagttgttttcacaagctatcctagagaacttatggaaataagc 2825255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 20553103 - 20553147
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||||||||||| |||||||||||| || |||||||||||||    
T  20553103 tataagttgttttcacaagttatcctagtgagcttatggaaataa 20553147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 8690457 - 8690422
Alignment:
Q  134 ttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||||||||| |||||||||||||||    
T  8690457 ttcataagttatcctagagaacttatggaaataagc 8690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 19624218 - 19624249
Alignment:
Q  122 atataagttgttttcataagttatcctagaga 153  Q
    ||||||||||||||||||||||||||||||||    
T  19624218 atataagttgttttcataagttatcctagaga 19624249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 22387883 - 22387820
Alignment:
Q  164 ataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||| |||| ||||||||| |||  ||| ||||||||||||||||||| | |||||||||||    
T  22387883 ataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatcc 22387820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 24363671 - 24363625
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||| |||||| ||||  ||||||||||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagc 24363625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 38010714 - 38010760
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  38010714 tataagctgttttcataatctatcctagagaacttatggaaataagc 38010760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 39542371 - 39542325
Alignment:
Q  122 atataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    ||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  39542371 atataagttgtttccataagttatcctggagagcttatgaaaataag 39542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 22283625 - 22283570
Alignment:
Q  171 ctcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||||||| |||||  | |||| ||||| ||||||||||||||||||||||    
T  22283625 ctcctaaacagtctcacaaaatt-tatgacagtagataagttcaaataagtcaatcc 22283570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 29363518 - 29363562
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||    
T  29363518 tataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 26747472 - 26747426
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||    
T  26747472 tataagttgttttcattagttatcctaaagaacttatggaaataagc 26747426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 11264301 - 11264346
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataag 11264346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 7694080 - 7694034
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  7694080 tataagctgttttcataagttatcctggagagtttatggaaataagc 7694034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 11158427 - 11158381
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||| |||| |||||| ||| |||||||||||    
T  11158427 tataagttgttttcataagctatcttagagagcttgtggaaataagc 11158381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 42866068 - 42866114
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||| |||||| |||| ||||||||| |||||    
T  42866068 tataagttgttttcataagctatccttgagagcttatggaagtaagc 42866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 19429459 - 19429394
Alignment:
Q  162 aaataagcactcctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||| |||| ||||||||| |||| ||| |||  ||||||||||| ||||||||| ||||||    
T  19429459 aaataagctctcccaaacagtctcacaagtgtttataccagtaaataagctcaaataagccaatcc 19429394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 8468952 - 8468992
Alignment:
Q  127 agttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||||||||||||||| ||||||| |||||| ||||||    
T  8468952 agttgttttcataagttattctagagagcttatgaaaataa 8468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 15173259 - 15173227
Alignment:
Q  195 tatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||| ||||||||||||||||||||||    
T  15173259 tatgtcagtagataagttcaaataagtcaatcc 15173227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 237397 - 237443
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  237397 tataagttgttttcataagttatcctatagagcttacggaaataagc 237443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 14548791 - 14548745
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  14548791 tataagttgttttcataagttattctggagagcttatggaaataagc 14548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 30322088 - 30322046
Alignment:
Q  125 taagttgttttcataagttatcctagagatcttatggaaataa 167  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  30322088 taagttgttttcataagttatcctaaagagcttatggaaataa 30322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 51510263 - 51510217
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||    
T  51510263 tataagttgttttcataagttatcgtggagagcttatggaaataagc 51510217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 41644516 - 41644469
Alignment:
Q  122 atataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  41644516 atataagctgttttcataagctatcgtagagatcttaaggaaataagc 41644469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 22214729 - 22214683
Alignment:
Q  123 tataagttgttttcataagttatcctagagatcttatggaaataagc 169  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||||||    
T  22214729 tataagttgttttcataagctatcctagagacattacggaaataagc 22214683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 45541664 - 45541717
Alignment:
Q  174 ctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatcc 227  Q
    |||||||||||||||| ||| |||  || |||||||| ||||||||||||||||    
T  45541664 ctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatcc 45541717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  124 ataagttgttttcataagttatcctagagatcttatggaaataag 168  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 31064722 - 31064774
Alignment:
Q  174 ctaaacagtcttacaaatgtgtatgtcagtaaataagttcaaataagtcaatc 226  Q
    ||||||| |||||||| | | ||||||||| | ||||||||||||||||||||    
T  31064722 ctaaacaatcttacaagtctttatgtcagttattaagttcaaataagtcaatc 31064774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University