View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_low_6 (Length: 419)
Name: NF8549_low_6
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 41858690 - 41858305
Alignment:
| Q |
12 |
tgagatgaaaagggttaaaacttggtaaagcatgacatcatatcactgtgcagtaattgtgcatgtatacaaatgatacaatnnnnnnnnnnnnnnnnnn |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41858690 |
tgagatgaaaaggggtaaaacttggtaaagcatgacatcatatcactgtgcagtaattgtgcatgtatacaaatgatacaataaaaaaaaaacaaaaaaa |
41858591 |
T |
|
| Q |
112 |
ggcgaaggatactcaaacaatagggnnnnnnntacaataacataaaactgaaacactgaaacttaaacaatggggaaaggattttatcttttaatcaatc |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41858590 |
ggcgaaggatactcaaacaatagggaaaaaaatacaataacataaaactgaaacactgaaacttaaacaatggggaaagcattttatcttttaatcaatc |
41858491 |
T |
|
| Q |
212 |
ttaatcggtaactatatgcaagtttgtttaattttttatatatgtttaatcaaaataaagagaagttacatgcaaatattgagggattaggccaaaactc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41858490 |
ttaatcggtaactatatgcaagtttgtttaattttttatatatgtttaatcaaaataaagagaagttacatgcaaatattgagggattaggccaaaactc |
41858391 |
T |
|
| Q |
312 |
aaagcaaaaccaagggcataaagaacatgaaaatccaataggataaaatcttggtgaacgaagaatgcatgacaaacaaaagttca |
397 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41858390 |
aaagcaaatccaagggcataaagaacatgaaaatccaataggataaaatcttggtgaacgaagaatgcatgacaaacaaaagttca |
41858305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University