View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_low_7 (Length: 382)
Name: NF8549_low_7
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 7085192 - 7085559
Alignment:
| Q |
1 |
tcactatgatata-aaatacaatcacaagcttcccttaattagtataaattacgggtataaaacgtgtaactatagtatttagaatgaaaaaggaaagat |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7085192 |
tcactatgatatacaaatacaatcacaagcttcccttaattagtataaattacgggtataaaacgtgtaactatagtatttagaatgaaaaaggaaagat |
7085291 |
T |
|
| Q |
100 |
gcactacaagatctaaatgataggaaaagggaatgctaaatttgaaggcaatgatgaaaatttgtgagttcagaatgaaataaaattttgtagtttcaag |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
7085292 |
gcagtacaagatctaaatgataggaaaagggaatgctaaatttgaaggcaatgatgaaaatttgtgagttcagaatgaaataaaattttgcagttttaag |
7085391 |
T |
|
| Q |
200 |
aggtaaaaatgatgtgaaagtaatgcgtcatggatactagtaaatcttatgcttgtggctggcagccactctttgaaatgcatgcgcactacaccaaact |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7085392 |
aggtaaaaatgatgtgaaagtaatgcgtcatggatactagtaaatcttatgcttgtggctggcagccactctttgaaatgcatgcgcactacaccaaact |
7085491 |
T |
|
| Q |
300 |
caaacactatctcacattttgtcctcactttcgatctctcacacgcaagcaaaaccattgctccttac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7085492 |
caaacactatctcacattttgtcctcactttcgatctctcacacgcaagcaaaaccattgctccttac |
7085559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 49016795 - 49016759
Alignment:
| Q |
143 |
gaaggcaatgatgaaaatttgtgagttcagaatgaaa |
179 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49016795 |
gaaggcaatgatgaaaaattgtgagttcagaatgaaa |
49016759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University