View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8549_low_8 (Length: 382)
Name: NF8549_low_8
Description: NF8549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8549_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 42861479 - 42861122
Alignment:
| Q |
19 |
ggtagatggtggtgctatttggcaaatcaaagataacgagcgttatggaggctataggtaataccaaacaaagaacaccaaattaataattaagaagata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42861479 |
ggtagatggtggtgctatttggcaaatcaaagataacgagcgttatggaggctataggtaataccaaacaaagaacaccaaattaataattaagaagata |
42861380 |
T |
|
| Q |
119 |
tgaataagtagggtatgtagacaaaatgggcattagcatatacattgaaaaaagatgaatagccccaaataaaaatgacaaaattaggaatgtacccact |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42861379 |
tgaataagtagggcatgtagacaaaatgggcattagcatatacattgaaaaaagatgaatagccccaaataaaaatgacaaaattaggaatgtacccact |
42861280 |
T |
|
| Q |
219 |
ataatttttcttcaaacaaggacttaacaccagctacaatgacttttgaagtgcttgatttaaggacaaatcgtcctattacctcctaatacttgaggtc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42861279 |
ataatttttcttcaaacaaggacttaacaccagctgcaatgacttttgaagtgctcgatttaaggacaaatcgtcctattacctcttaatacttgaggtc |
42861180 |
T |
|
| Q |
319 |
catattaacttcattatctcctatctaaacatcaaagtaattaagaacttcttctctc |
376 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42861179 |
catattaactttattatctcctatctaaacatgaaagtaattaagaacttcttctctc |
42861122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University