View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8550_low_1 (Length: 406)
Name: NF8550_low_1
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 6055693 - 6055371
Alignment:
| Q |
1 |
tcagagccagataacatatcaaattgagaaaccctaaaagagcaatcatcgatgattttgaaatggcctctgagttgatgttgaaccataatgaaatcgg |
100 |
Q |
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| T |
6055693 |
tcagagccagataacatatcaaattgagaaaccctaaaagagcaatcatcgatgattttgaaatggcctctgagttgatgttgaaccataatgaaatcgg |
6055594 |
T |
|
| Q |
101 |
attcgaaatcgatgaaggaactgtttcgagtgcatttcggagcaggatctgcatatccgaaaaagaacaaggataggaaaatcaataaagtttcacgaag |
200 |
Q |
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| T |
6055593 |
attcgaaatcgatgaaggaactgtttcgagtgcatttcggagcaggatctgcatatccgaaaaagaacaaggataggaaaatcaataaagtttcacgaag |
6055494 |
T |
|
| Q |
201 |
catgtggaaagatccgaatagagttaagcgggtatgtttcggattccgatggatccgaatcgccgctggtgatcggagaagttaaagttagttgcgatcg |
300 |
Q |
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| T |
6055493 |
catgtggaaagatccgaatagagttaagcgggtatgtttcggattccgatggatccgaatcgccgctggtgatcggagaagttaaagttagttgcgatcg |
6055394 |
T |
|
| Q |
301 |
ccgtcgatcacggtagtttttat |
323 |
Q |
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| T |
6055393 |
ccgtcgatcacggtagtttttat |
6055371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 6055338 - 6055293
Alignment:
| Q |
353 |
tgttgttgttgttgtgattggtgttttggcctctttgtttgatgtc |
398 |
Q |
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| T |
6055338 |
tgttgttgttgttgtgattggtgttttggcctttttgtttgatgtc |
6055293 |
T |
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