View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8550_low_12 (Length: 216)

Name: NF8550_low_12
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8550_low_12
NF8550_low_12
[»] chr7 (3 HSPs)
chr7 (57-216)||(30295701-30295860)
chr7 (58-194)||(25308245-25308381)
chr7 (67-124)||(9083764-9083821)
[»] chr1 (6 HSPs)
chr1 (57-182)||(17084216-17084341)
chr1 (93-166)||(1599492-1599565)
chr1 (59-126)||(1073303-1073370)
chr1 (77-111)||(33261070-33261104)
chr1 (77-111)||(33281229-33281263)
chr1 (77-144)||(25090335-25090402)
[»] chr6 (3 HSPs)
chr6 (64-194)||(4983569-4983699)
chr6 (77-128)||(17186162-17186213)
chr6 (58-126)||(3974120-3974188)
[»] chr3 (3 HSPs)
chr3 (14-194)||(44665474-44665654)
chr3 (62-104)||(11693285-11693327)
chr3 (75-111)||(30376027-30376063)
[»] chr4 (1 HSPs)
chr4 (60-194)||(10122718-10122852)
[»] scaffold0792 (1 HSPs)
scaffold0792 (59-111)||(1638-1690)
[»] scaffold0728 (2 HSPs)
scaffold0728 (12-112)||(1980-2080)
scaffold0728 (12-112)||(6920-7020)
[»] chr2 (1 HSPs)
chr2 (80-112)||(31126753-31126785)
[»] chr8 (1 HSPs)
chr8 (64-100)||(30484153-30484189)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 30295860 - 30295701
Alignment:
Q  57 tagtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatat 156  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30295860 tagtgctttctttagcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcataaaagagcatctgaatat 30295761  T
Q  157 agcaaaacctgaagaaatacgaaactgaagataatgattcgaaattgataaagggtttac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30295760 agcaaaacctgaagaaatacgaaactgaagataatgattcgaaattgataaagggtttac 30295701  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 25308245 - 25308381
Alignment:
Q  58 agtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatata 157  Q
    |||||||||||||||||| || |||||||  ||| ||||||| ||||||||||||  |||||||||||| | ||| | || ||| ||||| | | || ||    
T  25308245 agtgctttcttttgcacggaagattctagtgttcctttcctttcaaattacccaagagcttgcaaaccagattaaatacataaaggagcaccgggattta 25308344  T
Q  158 gcaaaacctgaagaaatacgaaactgaagataatgat 194  Q
    || | |||||| |||||||  ||||||||||||||||    
T  25308345 gcgatacctgaggaaatactgaactgaagataatgat 25308381  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 9083764 - 9083821
Alignment:
Q  67 ttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaac 124  Q
    ||||||||| ||||||||||| |||  ||||||||||||||  ||| |||||||||||    
T  9083764 ttttgcacggaaaattctagcgttcccttccttccaaattagtcaagtgcttgcaaac 9083821  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 17084341 - 17084216
Alignment:
Q  57 tagtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatat 156  Q
    |||| |||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||    
T  17084341 tagtactttctttagcatgaaaaagtcttgcattcatttccttccaaattacccaaatgcttgcaaaccatagtaaatgcataaaagagcatctggatat 17084242  T
Q  157 agcaaaacctgaagaaatacgaaact 182  Q
    |||| ||||||||||| | |||||||    
T  17084241 agcataacctgaagaagtgcgaaact 17084216  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 1599492 - 1599565
Alignment:
Q  93 tttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatatagcaaaacct 166  Q
    ||||||||||||||||||||||| ||| |||||| ||||| |||| ||||||||||||  ||||||||||||||    
T  1599492 tttccttccaaattacccaaatgattgtaaaccaaaataaatgcataaaagagcatctagatatagcaaaacct 1599565  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 1073303 - 1073370
Alignment:
Q  59 gtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaacca 126  Q
    |||||||||| ||||| |||||||||||||||| |||||||| |||| ||||| | ||||||||||||    
T  1073303 gtgctttcttgtgcacaaaaaattctagcattcgtttccttctaaatcacccacaagcttgcaaacca 1073370  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 33261104 - 33261070
Alignment:
Q  77 aaaattctagcattcatttccttccaaattaccca 111  Q
    |||||||||||||||||||||||||||||||||||    
T  33261104 aaaattctagcattcatttccttccaaattaccca 33261070  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 33281263 - 33281229
Alignment:
Q  77 aaaattctagcattcatttccttccaaattaccca 111  Q
    |||||||||||||||||||||||||||||||||||    
T  33281263 aaaattctagcattcatttccttccaaattaccca 33281229  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 25090335 - 25090402
Alignment:
Q  77 aaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaaga 144  Q
    ||||||||||||||| ||||||||||||||| |||| ||||| | ||||| | ||| |||| ||||||    
T  25090335 aaaattctagcattcctttccttccaaattaaccaagtgcttccgaaccagattaactgcataaaaga 25090402  T

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Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 4983699 - 4983569
Alignment:
Q  64 ttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatatagcaaaa 163  Q
    ||||||| ||| ||| ||||| |||||| |||||||| ||||| ||||||||||||||||||||| ||| |||| ||||||||||||| |  ||||||||    
T  4983699 ttcttttacacaaaatattcttgcattcttttccttctaaattgcccaaatgcttgcaaaccatactaaatgcataaaagagcatctggaattagcaaaa 4983600  T
Q  164 cctgaagaaatacgaaactgaagataatgat 194  Q
    || |||||||||| |||||||||||||||||    
T  4983599 ccagaagaaatacaaaactgaagataatgat 4983569  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 17186213 - 17186162
Alignment:
Q  77 aaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccata 128  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  17186213 aaaattctagcattcatttccttccaaatgacccaaaaacttgcaaaccata 17186162  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 3974188 - 3974120
Alignment:
Q  58 agtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaacca 126  Q
    ||||||||||||||||| ||| ||| |||| ||| ||||||||| ||||||  || |||||||||||||    
T  3974188 agtgctttcttttgcacaaaagattatagcgttcctttccttcccaattacataagtgcttgcaaacca 3974120  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 44665474 - 44665654
Alignment:
Q  14 caccaaaaagaaagtagtacgattttttctaaaagctcacaagtagtgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaa 113  Q
    |||||||||||||| |||  ||||||||| ||||||| | |||| |||||||||||| || | ||||||||||||||  ||||||||||||| |||||      
T  44665474 caccaaaaagaaaggagtttgattttttccaaaagctaataagttgtgctttcttttacatggaaaattctagcatttctttccttccaaatcacccacg 44665573  T
Q  114 tgcttgcaaaccataataagtgcaaaaaagagcatctgaatatagcaaaacctgaagaaatacgaaactgaagataatgat 194  Q
      ||||||||||| | ||| |||| | | ||||||||  || |||||| ||| || ||| ||| |||||||||| ||||||    
T  44665574 aacttgcaaaccaaattaaatgcatagatgagcatcttgatttagcaagacccgaggaagtaccaaactgaagaaaatgat 44665654  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 11693327 - 11693285
Alignment:
Q  62 ctttcttttgcacgaaaaattctagcattcatttccttccaaa 104  Q
    |||||||||||||| |||||||| |||||| ||||||||||||    
T  11693327 ctttcttttgcacggaaaattcttgcattcctttccttccaaa 11693285  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 30376027 - 30376063
Alignment:
Q  75 gaaaaattctagcattcatttccttccaaattaccca 111  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  30376027 gaaaaattctatcattcatttccttccaaataaccca 30376063  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 10122718 - 10122852
Alignment:
Q  60 tgctttcttttgcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcaaaaaagagcatctgaatatagc 159  Q
    |||||||| ||| | | ||||||||||||||| ||||||| |||||||||||| ||||||||||| | | ||||| || ||| ||||| |   || || |    
T  10122718 tgctttctattgtatggaaaattctagcattcctttcctttcaaattacccaattgcttgcaaactagattaagtacataaaggagcaacgagatttaac 10122817  T
Q  160 aaaacctgaagaaatacgaaactgaagataatgat 194  Q
     |||||| || |||||| || ||||||||||||||    
T  10122818 gaaacctaaacaaataccaatctgaagataatgat 10122852  T

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Target: scaffold0792 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0792
Description:

Target: scaffold0792; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 1638 - 1690
Alignment:
Q  59 gtgctttcttttgcacgaaaaattctagcattcatttccttccaaattaccca 111  Q
    |||||||||| ||||| |||||||||||||||| |||||||| |||| |||||    
T  1638 gtgctttcttgtgcacaaaaaattctagcattcgtttccttctaaatcaccca 1690  T

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Target: scaffold0728 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 2080 - 1980
Alignment:
Q  12 atcaccaaaaagaaagtagtacgattttttctaaaagctcacaagtagtgctttcttttgcacgaaaaattctagcattcatttccttccaaattaccca 111  Q
    |||||||||||||||| ||   ||| |||||||| |||| | |||  ||||| ||||||||| | |||||| ||| |||| ||||||||||||| |||||    
T  2080 atcaccaaaaagaaagaagcttgatgttttctaagagctgataaggtgtgctctcttttgcatggaaaattatagaattcctttccttccaaatgaccca 1981  T
Q  112 a 112  Q
    |    
T  1980 a 1980  T

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Target: scaffold0728; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 7020 - 6920
Alignment:
Q  12 atcaccaaaaagaaagtagtacgattttttctaaaagctcacaagtagtgctttcttttgcacgaaaaattctagcattcatttccttccaaattaccca 111  Q
    |||||||||||||||| ||   ||| |||||||| |||| | |||  ||||| ||||||||| | |||||| ||| |||| ||||||||||||| |||||    
T  7020 atcaccaaaaagaaagaagcttgatgttttctaagagctgataaggtgtgctctcttttgcatggaaaattatagaattcctttccttccaaatgaccca 6921  T
Q  112 a 112  Q
    |    
T  6920 a 6920  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 31126785 - 31126753
Alignment:
Q  80 attctagcattcatttccttccaaattacccaa 112  Q
    |||||||||||||||||||||||||||||||||    
T  31126785 attctagcattcatttccttccaaattacccaa 31126753  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 30484189 - 30484153
Alignment:
Q  64 ttcttttgcacgaaaaattctagcattcatttccttc 100  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  30484189 ttcttttgcacggaaaattctagcattcctttccttc 30484153  T

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