View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8550_low_2 (Length: 384)
Name: NF8550_low_2
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 27563870 - 27564229
Alignment:
| Q |
13 |
gttttatccaaagatcaaatgtcataatagatagtacaagtcccaccttctataaataaaataaaacaaacatattaccctacctgaagtatcgatccaa |
112 |
Q |
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| T |
27563870 |
gttttatccaaagatcaaatgtcataatagatagtacaagtcccaccttctataaataaaataaaacaaacatattaccctacctgaagtatcgatccaa |
27563969 |
T |
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| Q |
113 |
gagttctggtatgtttaaacaactcttgatacttatttagggaggcagggcccgcgaagttctggtgtgcgaatttcacggggtttgtcttgcaaatata |
212 |
Q |
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| T |
27563970 |
gagttctggtatgtttaaacaactcttgatacttatttagggaggcagggcccgcgaagttctggtgtgcgaatttcatggggtttgtcttgcaaaaata |
27564069 |
T |
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| Q |
213 |
taaaatgtggttcataatggctcatgatttttcgttcaatagccggtcctgcttgaggttttggacttgtacatgtatcagataattaatatcaacattg |
312 |
Q |
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| T |
27564070 |
taaaatgtggttcataatggctcatgattttgcattcaatagccggtcctgcttgaggttttgaacttgtacatgtatcagataattaatatcaacattg |
27564169 |
T |
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| Q |
313 |
tttgttggctattggcaagatatgttataagcaatgaacaaggcatgaaccgcttttctc |
372 |
Q |
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| T |
27564170 |
tttgttggctattggcaagatatgttataagcaatgaacaaggcatgaaccgcttttctc |
27564229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 149 - 372
Target Start/End: Complemental strand, 27585591 - 27585361
Alignment:
| Q |
149 |
ttagggaggcagggcccgcgaagttctggtgtgcgaatttcacggggtttgtcttgc--aaatatataaaatgtggttcataatggctcatgatttttcg |
246 |
Q |
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| T |
27585591 |
ttagggaggcagggaccgcgaagttctggtatgcaaatttcacggggtttgtcttgcaaaaatatataatatgtggttcattatgactcatgatttt--g |
27585494 |
T |
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| Q |
247 |
ttcaatagccggtcctgcttgaggttttggacttgtacatg------tatcagataattaatat--caacattgtttgttggctattggcaagatatgtt |
338 |
Q |
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| T |
27585493 |
ttctatagccgttccttcttaaggttttgaagttgaacatgtatcactatcagataattaatatagcaacattgtttgttggctattggc-agatatgtt |
27585395 |
T |
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| Q |
339 |
ataagcaatgaacaaggcatgaaccgcttttctc |
372 |
Q |
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| T |
27585394 |
ataagctatgaacaaggcatgaaccacttttctc |
27585361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 27422730 - 27422690
Alignment:
| Q |
198 |
tgtcttgcaaatatataaaatgtggttcataatggctcatg |
238 |
Q |
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| T |
27422730 |
tgtcatgcaaaaatataaaatgtggttcatagtggctcatg |
27422690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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