View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8550_low_3 (Length: 367)
Name: NF8550_low_3
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 52 - 353
Target Start/End: Original strand, 22667214 - 22667515
Alignment:
| Q |
52 |
aataattataataggcacataaaacctcaattgtgtgagtgtgtgaattaattaaagtagagatgaatgaagaaaaccttcttaggaatacgtttctctg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22667214 |
aataattataataggcacataaaacctcaattgtgtgagtgtgtgaattaattaaagtagagatgaatgaagaaaaccttcttaggaatacgtttctctg |
22667313 |
T |
|
| Q |
152 |
gtggctttgtacaagaagtgaaaaattctgaaagttggtgaaaaatacccattatttgtatgtgctccaaggtaacttgttattgnnnnnnntttgatat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
22667314 |
gtggctttgtacaagaagtgaaaaattctgaaagttggtgaaaaatacccattatttgtgtgtgctccaaggtaacttgttattgaaaaaaatttgatat |
22667413 |
T |
|
| Q |
252 |
ggaactttagttgtttgtgaacttcaacatgcatgatttcatatatatagcaatagcaatacattggtcataataaattaataatttttgtgtgataatt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22667414 |
ggaactttagttgtttgtgaacttcaacatgcatgatttcatatatatagcaatagcaatacattggtcataataaattaataatttttgtttgataatt |
22667513 |
T |
|
| Q |
352 |
tt |
353 |
Q |
| |
|
|| |
|
|
| T |
22667514 |
tt |
22667515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University