View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8550_low_5 (Length: 357)

Name: NF8550_low_5
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8550_low_5
NF8550_low_5
[»] scaffold0006 (4 HSPs)
scaffold0006 (19-344)||(130924-131246)
scaffold0006 (76-121)||(194825-194870)
scaffold0006 (76-124)||(125322-125370)
scaffold0006 (244-273)||(125448-125477)
[»] chr1 (3 HSPs)
chr1 (19-344)||(13602267-13602589)
chr1 (303-344)||(23833627-23833668)
chr1 (92-126)||(13487572-13487606)
[»] chr6 (2 HSPs)
chr6 (60-124)||(21770132-21770196)
chr6 (244-273)||(21770274-21770303)
[»] chr7 (2 HSPs)
chr7 (310-344)||(4800007-4800041)
chr7 (297-334)||(4800047-4800084)
[»] scaffold0291 (1 HSPs)
scaffold0291 (244-283)||(17805-17845)


Alignment Details
Target: scaffold0006 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 130924 - 131246
Alignment:
Q  19 atatcttcttcagaaaaacaataaattgactacttccatgttcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtg 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |    
T  130924 atatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcg 131023  T
Q  119 acaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttct 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  131024 acaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaac---attgatgatcggtttct 131120  T
Q  219 cagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131121 cagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctca 131220  T
Q  319 acacaaccttcaagtattcgctctct 344  Q
    ||||||||||||||||||| ||||||    
T  131221 acacaaccttcaagtattcactctct 131246  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 194825 - 194870
Alignment:
Q  76 acattgtgcagaaccttctaatgataacttcctgctaaaagtgaca 121  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  194825 acattgtacagaacctgctaatgataacttcctgctaaaagtgaca 194870  T

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Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 125322 - 125370
Alignment:
Q  76 acattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 124  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  125322 acattgtacaaaacctactaatgataacttcctgctaaaagtgacaata 125370  T

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Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 125448 - 125477
Alignment:
Q  244 atgattatacaacctatggactctcacaaa 273  Q
    ||||||||||||||||||||||||||||||    
T  125448 atgattatacaacctatggactctcacaaa 125477  T

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Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 13602267 - 13602589
Alignment:
Q  19 atatcttcttcagaaaaacaataaattgactacttccatgttcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtg 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |    
T  13602267 atatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcg 13602366  T
Q  119 acaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttct 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  13602367 acaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaac---attgatgatcggtttct 13602463  T
Q  219 cagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602464 cagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctca 13602563  T
Q  319 acacaaccttcaagtattcgctctct 344  Q
    ||||||||||||||||||| ||||||    
T  13602564 acacaaccttcaagtattcactctct 13602589  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 23833668 - 23833627
Alignment:
Q  303 taggtgcccttgctcaacacaaccttcaagtattcgctctct 344  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  23833668 taggttcccttgctcaacacaaccttcaagtattcactctct 23833627  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
Q  92 tctaatgataacttcctgctaaaagtgacaataag 126  Q
    |||||||||||||||||| ||||||||||||||||    
T  13487572 tctaatgataacttcctgttaaaagtgacaataag 13487606  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 21770132 - 21770196
Alignment:
Q  60 tcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 124  Q
    |||||||||| || | ||||||| |||||||| ||||||||||||||||| ||| ||||| ||||    
T  21770132 tcttttgtacgtttttacattgtacagaacctgctaatgataacttcctggtaatagtgagaata 21770196  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
Q  244 atgattatacaacctatggactctcacaaa 273  Q
    ||||||||||||||||||||||||||||||    
T  21770274 atgattatacaacctatggactctcacaaa 21770303  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 4800041 - 4800007
Alignment:
Q  310 ccttgctcaacacaaccttcaagtattcgctctct 344  Q
    |||||||||||||||||||||||||||| ||||||    
T  4800041 ccttgctcaacacaaccttcaagtattcactctct 4800007  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
Q  297 gctgactaggtgcccttgctcaacacaaccttcaagta 334  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  4800084 gctgattaggttcccttgctcaacacaaccttcaagta 4800047  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
Q  244 atgattatacaacctatggactctc-acaaactatgagcac 283  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  17845 atgattatacaacctatggactgtcaacaaactatgagcac 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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