View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8550_low_6 (Length: 339)
Name: NF8550_low_6
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 24049420 - 24049737
Alignment:
| Q |
13 |
atggacatcacgtgtaatatggttggctgatatgctgatgttgatctcaaagcaagaaacatacacattctaagaccattctaaattaaattaatttaat |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24049420 |
atggacatcacgtgtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacattctaagaccattctaacttaaattaatttaat |
24049519 |
T |
|
| Q |
113 |
catattcnnnnnnnnnaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaa |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049520 |
catattctttttttttaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaa |
24049619 |
T |
|
| Q |
213 |
agatcatatgcatttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049620 |
agatcatatgcatttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttc |
24049719 |
T |
|
| Q |
313 |
attggttaggagtataat |
330 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24049720 |
attggttaggagtataat |
24049737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 24052556 - 24052880
Alignment:
| Q |
13 |
atggacatcacgtgtaatatggttggctgatatgctgatgttgatctcaaagcaagaaacatacacattctaagaccattctaaattaaattaatttaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24052556 |
atggacatcacgtgtaatatggttggctgatatgctgatgttgatcacaaagcaagaaacatacacattctaagaccattctaacttaaattaatttaat |
24052655 |
T |
|
| Q |
113 |
catattcnnnnnnnnnaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaa |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24052656 |
catattctttttttttaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaa |
24052755 |
T |
|
| Q |
213 |
agatcatatgcatttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatat-------gcaaaccacagataccgccta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24052756 |
agatcatatgcatttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaacggcaaaccacagataccgccta |
24052855 |
T |
|
| Q |
306 |
aatgttcattggttaggagtataat |
330 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
24052856 |
aatgttcattggttaggaatataat |
24052880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 286
Target Start/End: Complemental strand, 4261422 - 4261295
Alignment:
| Q |
159 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttggtagtttgtatagactgactcatt |
258 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| ||||||||| |
|
|
| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
|
| Q |
259 |
caaccgttctcatttacttctgatatgc |
286 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |
|
|
| T |
4261322 |
caactgttctcatttactgctgatatgc |
4261295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
166 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
226 |
Q |
| |
|
|||| ||| ||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 4027546 - 4027602
Alignment:
| Q |
157 |
actttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaa |
213 |
Q |
| |
|
||||||||||||||||| |||| || |||| | |||||||||||||| |||||||| |
|
|
| T |
4027546 |
actttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University