View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8550_low_8 (Length: 302)
Name: NF8550_low_8
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 36332271 - 36332437
Alignment:
| Q |
1 |
atggttagcagggaacaatattaacagaaaccatttgaacctattctacttgttgctttctttgatcagcttgatcaatttctttgtctatttggtaatt |
100 |
Q |
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| T |
36332271 |
atggttggcagggaacaatattaacagaaaccatttgaaccttttctacttgttgctttctttgatcagcttgatcaatttctttgtttatttggtaatt |
36332370 |
T |
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| Q |
101 |
tcaaagaggtataattataggcctcaaggtcctactgttaaaggtgtggattctcaatagggaatat |
167 |
Q |
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| T |
36332371 |
tcaaagaggtataagtataggcctcaaggtcctactgttaaaggtgtggattctcaatagggaatat |
36332437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 36325010 - 36325176
Alignment:
| Q |
1 |
atggttagcagggaacaatattaacagaaaccatttgaacctattctacttgttgctttctttgatcagcttgatcaatttctttgtctatttggtaatt |
100 |
Q |
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| T |
36325010 |
atggttggcagggaacaatattaacagaaaccatttgaatctgttctacttgttgctttctttactgagcttgatcaatttctttgtctatttggtagtt |
36325109 |
T |
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| Q |
101 |
tcaaagaggtataattataggcctcaaggtcctactgttaaaggtgtggattctcaatagggaatat |
167 |
Q |
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| T |
36325110 |
tcaaagaggtacaagtataggcctcaaggtcatgcaattaaaggtgtggattctcaatagagaatat |
36325176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 36332493 - 36332602
Alignment:
| Q |
169 |
tgtcaaacgtaagtgaagaaatagaggtttgcacgtttgttttccttgcacgtctgttaagttagtggctattgttttaaagaaattaatttgaagtttt |
268 |
Q |
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| T |
36332493 |
tgtcaaacgtaagtgaagaaatagaggtttgcacgtttgttttccttgcacgtctgttaagttagtggctattgttttaaagaaattaatttgaagtttt |
36332592 |
T |
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| Q |
269 |
attgtacctc |
278 |
Q |
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|||||||||| |
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| T |
36332593 |
attgtacctc |
36332602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 5460278 - 5460398
Alignment:
| Q |
10 |
agggaacaatattaacagaaaccatttgaacctattctacttgttgctttctttgatcagcttgatcaatttctttgtctatttggtaatttcaaagagg |
109 |
Q |
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| T |
5460278 |
agggaataatatcaatagaaatcatctaaacctgttctacttgttcctttccattgtgagcttgatcaacttctttgtctatttgtttgtttcaaagaga |
5460377 |
T |
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| Q |
110 |
tataattataggcctcaaggt |
130 |
Q |
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|| || || || ||||||||| |
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| T |
5460378 |
tacaaatacagacctcaaggt |
5460398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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