View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8550_low_9 (Length: 263)
Name: NF8550_low_9
Description: NF8550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8550_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 10820160 - 10819926
Alignment:
| Q |
12 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
112 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
212 |
agcagcagcatttaaagcagcttgcacagtcttgt |
246 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgt |
10819926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 1630119 - 1630353
Alignment:
| Q |
12 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1630119 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcac |
1630218 |
T |
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| Q |
112 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
211 |
Q |
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| T |
1630219 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
1630318 |
T |
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| Q |
212 |
agcagcagcatttaaagcagcttgcacagtcttgt |
246 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
1630319 |
agcagcagcatttaaagcagcttgcacagtcttgt |
1630353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 1624151 - 1624378
Alignment:
| Q |
19 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaa |
118 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
1624151 |
aatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccag |
1624250 |
T |
|
| Q |
119 |
cataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagca |
218 |
Q |
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|||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
1624251 |
cataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagca |
1624350 |
T |
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| Q |
219 |
gcatttaaagcagcttgcacagtcttgt |
246 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
1624351 |
gcatttaaagcagcttgcacagtcttgt |
1624378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 1607130 - 1607357
Alignment:
| Q |
19 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaa |
118 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
1607130 |
aatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccag |
1607229 |
T |
|
| Q |
119 |
cataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagca |
218 |
Q |
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|||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
1607230 |
cataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagca |
1607329 |
T |
|
| Q |
219 |
gcatttaaagcagcttgcacagtcttgt |
246 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
1607330 |
gcatttaaagcagcctgcacagtcttgt |
1607357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 18785179 - 18785404
Alignment:
| Q |
21 |
tataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaaca |
120 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
121 |
taatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagcagc |
220 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
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| Q |
221 |
atttaaagcagcttgcacagtcttgt |
246 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
18785379 |
atttagagcagcttgcacagtcttgt |
18785404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 12803394 - 12803539
Alignment:
| Q |
39 |
gcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacataatgttatcatt-atga |
137 |
Q |
| |
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||||||||||| || ||||||||| |||||||| ||||| ||||||||| | |||||| |||||||||| ||||||||||| |||||||| || |
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| T |
12803394 |
gcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatattatcattcatct |
12803493 |
T |
|
| Q |
138 |
acagcaacctcaatgttctctttataaacacctttcttcacatgtat |
184 |
Q |
| |
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| ||||| |||| |||||| |||||||||||||||||||| |||| |
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| T |
12803494 |
tc-ccaaccacaatattctctctataaacacctttcttcacacgtat |
12803539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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