View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_high_14 (Length: 315)

Name: NF8551_high_14
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_high_14
NF8551_high_14
[»] chr3 (5 HSPs)
chr3 (32-110)||(42577802-42577880)
chr3 (32-110)||(42570616-42570694)
chr3 (59-110)||(42573015-42573066)
chr3 (241-297)||(42594573-42594629)
chr3 (35-104)||(42594494-42594563)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 42577802 - 42577880
Alignment:
Q  32 aaggaaaaggaggatacactgcctaaaaagattatggtgagtttagttccttgaactgcttgtttatgctatgatactc 110  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||| |||||    
T  42577802 aaggaaaagaacgatacactgcctaaaaagattatggtgagtttagttcatttaactggttgtttatgttatgctactc 42577880  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 42570616 - 42570694
Alignment:
Q  32 aaggaaaaggaggatacactgcctaaaaagattatggtgagtttagttccttgaactgcttgtttatgctatgatactc 110  Q
    ||||||||| | |||||||||||||| || ||||||||||||||||| |||| ||||| |||||||||||||| |||||    
T  42570616 aaggaaaagaacgatacactgcctaagaaaattatggtgagtttagtacctttaactggttgtttatgctatgttactc 42570694  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 42573015 - 42573066
Alignment:
Q  59 aagattatggtgagtttagttccttgaactgcttgtttatgctatgatactc 110  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  42573015 aagattatggtgagtttagttccttgaactggttgtttgtgctatgctactc 42573066  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 42594573 - 42594629
Alignment:
Q  241 gttcattctctttatggaagcatttggatagttctgttttaaggcctaaattaaaat 297  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||| || ||||||||    
T  42594573 gttcattctttttatggaagcatttagatacttctgttttaaggcgtacattaaaat 42594629  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 42594494 - 42594563
Alignment:
Q  35 gaaaaggaggatacactgcctaaaaagattatggtgagtttagttccttgaactgcttgtttatgctatg 104  Q
    ||||||||| |||  |||||||||||  || ||||||||||||||||||||| || |||||||| |||||    
T  42594494 gaaaaggagaatattctgcctaaaaacgttgtggtgagtttagttccttgaattggttgtttatactatg 42594563  T

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