View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_high_29 (Length: 201)
Name: NF8551_high_29
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 492306 - 492125
Alignment:
| Q |
1 |
ataaccctgaaccatattataaacatgcagataaaatacttcggaaatcgctaaaattgtgataaaaaatcacaacaaatcagaaactacagattaaaac |
100 |
Q |
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| T |
492306 |
ataaccctgaaccatattatagacatgcagataaaatacttcggaaaacgctaaaattgtgataaaaaatcacaacaaatcagaaactacagattaaaac |
492207 |
T |
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| Q |
101 |
ttctacagctgtctaccactcaaccaaacacttgcttacttatctatcaaacaaacattaccgtggacatggaggaacatca |
182 |
Q |
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| T |
492206 |
ttctacagttgtctaccactcaaccaaacacttgcttacttatctatcaaacaaacattaccatggacatggaggaacatca |
492125 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 495622 - 495585
Alignment:
| Q |
119 |
ctcaaccaaacacttgcttacttatctatcaaacaaac |
156 |
Q |
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| T |
495622 |
ctcaaccagacacttgcttacatatctatcaaacaaac |
495585 |
T |
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