View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_high_6 (Length: 526)
Name: NF8551_high_6
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Complemental strand, 3568979 - 3568483
Alignment:
| Q |
14 |
acctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
113 |
Q |
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| T |
3568979 |
acctgtgttactattatgaactatatcatctgccaaaaaaccaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
3568880 |
T |
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| Q |
114 |
agttccatgtcatgttggatgttaggatgtatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
213 |
Q |
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| T |
3568879 |
agttccatgtcatgttggatgttaggatatatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
3568780 |
T |
|
| Q |
214 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatctaaatgtgctatgttggccgagttagcaagatcattctgctga |
313 |
Q |
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| T |
3568779 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatccaaatgtgctatgttggccgagttagcaagatcattctgctga |
3568680 |
T |
|
| Q |
314 |
tgcgccaatgtgggtgaggagccagaagggcgtattccttcaatcgtgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaaggagatt |
413 |
Q |
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| T |
3568679 |
tgcgccaatgtgggtgaggagccagaagggcgtattccttcaatcatgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaaggagatt |
3568580 |
T |
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| Q |
414 |
gctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaaccgacgcagctgcaaccgaaaaagg |
510 |
Q |
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| T |
3568579 |
cctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaacggacgcagctgcaaccgaaaaagg |
3568483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 18485357 - 18485273
Alignment:
| Q |
10 |
cagaacctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgac |
94 |
Q |
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|||||||| |||||| || | |||||| ||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
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| T |
18485357 |
cagaacctatgttaccattaagaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgac |
18485273 |
T |
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