View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8551_high_9 (Length: 436)
Name: NF8551_high_9
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_high_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 46845005 - 46844577
Alignment:
| Q |
6 |
aaccccaacatcaatcccctaattcatttcnnnnnnnnnnnntcatctctacaatatctcagcattttaattcctctcaaaattttgtgcagctacctta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46845005 |
aaccccaacatcaatcccctaattcatttcaaaaaataaaaatcatctctacaatatctcagcattttaattcctctcaaaattttgtgcagctacctta |
46844906 |
T |
|
| Q |
106 |
gagaggttgagttgagaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaa |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844905 |
gagaggtcgagttgagaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaa |
46844806 |
T |
|
| Q |
206 |
attgtttttgtttaggtggaattatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
46844805 |
attgtttttgtttaggtggaattatgtcacatactcaatcatccttagcttccaatttaggcatc--ttgtgctatataggcatcacgtcctccaacaac |
46844708 |
T |
|
| Q |
306 |
atcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844707 |
atcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattcc |
46844608 |
T |
|
| Q |
406 |
ttcaaggaatcgttctaattctaatcggaca |
436 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
46844607 |
ttcaaggaatcggtctaattctaatcggaca |
46844577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
294 |
tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
351 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University