View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_1 (Length: 896)
Name: NF8551_low_1
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 850; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 8 - 877
Target Start/End: Original strand, 20921777 - 20922646
Alignment:
| Q |
8 |
agaagcagagaatgtagtaaagtgttaaagagttgtatattttcagtcgatggatctgcttgcacatttgttttgaaatccaaaagagtgactatattga |
107 |
Q |
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| T |
20921777 |
agaagaagagaatgtagtaaagtgttaaggagttgtatattttcagtcgatggatctgcttgcacatttgttttgaaatccaaaagagtgactatattga |
20921876 |
T |
|
| Q |
108 |
ctggactgaattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccg |
207 |
Q |
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| T |
20921877 |
ctggactgaattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccg |
20921976 |
T |
|
| Q |
208 |
tcaagttattagtatatctccaaaggaaaatgtgataactagaagtgactcctcggtgatataagttggtgtttcaaagcagcatgtagaatgaagttaa |
307 |
Q |
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| T |
20921977 |
tcaagttattagtatatctccaaaggaaaatgcgataactagaagtgactcctcggtgatataagttggtgtttcaaagcagcatgtagaatgaagttaa |
20922076 |
T |
|
| Q |
308 |
cctccttgttattagcatgtaagtcggaagacttaattcttctagaaccgtaggagaagtgagtttggataaatggtagtaatcagattgaaaataagta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20922077 |
cctccttgttattagcatgtaagtcggaagacttaattcttctagaaccataggagaagtgagtttggataaatggtagtaatcagattgaaaataagta |
20922176 |
T |
|
| Q |
408 |
gcatgtcatagagtgattttcggcttgatggttgtgaaatcataacaaagttaagttaatcgtggaattcttcggtatagttgaactagtgtactggatg |
507 |
Q |
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| T |
20922177 |
gcatgtcatagagtgattttcggcttgatggttgtgaaatcataacaaagttaagttaatcgtggaattcttcggtatagttgaactagtgtactggatg |
20922276 |
T |
|
| Q |
508 |
aagtaagttgataaatcaaagttgcgcagcggaaaattaactaagaataaagaacggattacgttgaaggctaggaccgtggtatgaggcagttatggaa |
607 |
Q |
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| T |
20922277 |
aagtaagttgataaatcaaagttgcgcagcggaaaattaactaagaataaagaacggattacgttgaaggctaggaccgtggtatgaggcagttatggaa |
20922376 |
T |
|
| Q |
608 |
tattagtatgtagagacgaactgagtatatggcaaactgtaatgaggaatcttaagagtcaagctaagaaatactttaaataagaatccaggggtgacag |
707 |
Q |
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| T |
20922377 |
tattagtatgtagagacgaactgagtatatggcaaactgtaatgaggaatcttaagagtcaagctaagaaatactttaaataagaatccaggggtgacag |
20922476 |
T |
|
| Q |
708 |
aagttgaatcagtctaagagaatgtgataaaatagtgacagcgtgtcttgctgtattaagtctaaggcaattggaatcaccgctggtatgataacccaat |
807 |
Q |
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| T |
20922477 |
aagttgaagcagtctaagagaatgtgataaaatagtgacagcgtgtcttgctgtattaagtctaaggcaattggaatcaccgctggtatgataacccaat |
20922576 |
T |
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| Q |
808 |
taatcggttcagttacttcaaggggttagcagtatcggtttagttagaagagagttgtgtacgaggcgac |
877 |
Q |
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| T |
20922577 |
taatcggttcagttacttcaaggggttagcagtatcggtttagttagaagagagttgtgtacgaggcgac |
20922646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 24533380 - 24533285
Alignment:
| Q |
116 |
aattgtggaaaccgaggctgtcccagaatagaacgtaagtatgaatacaactacgtacaagaatggattagatggagttaagtctcaaaccgtcaag |
212 |
Q |
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| T |
24533380 |
aattgtggaaagc-aggttgtcccataagagaccgtaagtgtgaatataactacggacaagaatggattaattggaagtaagtctcaaaccatcaag |
24533285 |
T |
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