View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_11 (Length: 433)
Name: NF8551_low_11
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 1331924 - 1332334
Alignment:
| Q |
19 |
aatgtaaacttttaaattttgtgtctttataagatagta---ttcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgcagg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331924 |
aatgtaaacttttaaattttgtgtctttataagatagtactattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgcagg |
1332023 |
T |
|
| Q |
116 |
ttatgagagtggcacgaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttatacagacagctcagctatttgaacgagccct |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332024 |
ttatgagagtggcacaaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttatacagacagctcagctatttgaacgagccct |
1332123 |
T |
|
| Q |
216 |
cagttcttcacaatcttcgggttagatattctcaagatatgatttatgtatgtccgctgctatggtttgttgttttacacagatgattatctatgtattc |
315 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1332124 |
cagttcttcacaatcttcggtttagatattctcaagatatgatttatgtatgtccgctgctatggtttgttgttttacgcagatgattatctatgtattc |
1332223 |
T |
|
| Q |
316 |
tcatatgctgcttgtgcgttttctgtatgcagattaaagttgggccaattttaattgctctcaatcccttcaaagatgtacagatttacggaaacgatta |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1332224 |
tcatatgctgcttgtgcgttttctgtatgcagagtaaagttgggccaattttaattgctctcaatcccttcaaagatgtacagatttacggaaacgatta |
1332323 |
T |
|
| Q |
416 |
tgtctctgctt |
426 |
Q |
| |
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||||||||||| |
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| T |
1332324 |
tgtctctgctt |
1332334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 33970430 - 33970831
Alignment:
| Q |
19 |
aatgtaaacttttaaattttgtgtctttataagatagtattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgctgcaggtta |
118 |
Q |
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||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
33970430 |
aatgtaaacttctaaattttgt--ctttataagatagtcttcattgttgagtatgcaagataacatgctatttgtgttgatgagttgttgctgcaggtta |
33970527 |
T |
|
| Q |
119 |
tgagagtggcacgaacagatctcttgccagctaatcctgatattttagagtgtgtggatgatcttatacagacagctcagctatttgaacgagccctcag |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
33970528 |
tgaaagtggcacgaacagatctcttgccagctaatcctgatattttagagggcgtggatgatcttatacag----ctcagctatttgaacgagccctcgg |
33970623 |
T |
|
| Q |
219 |
ttcttcacaatcttcgggttagatattctcaagatatgatttatgtatgtccgctgctatggtttgttgttttacacagatgattatctatgtattctca |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33970624 |
ttcttcacaatcttcggtgtagatattctcaagatatgatttatgtatgtccgctgctatggtttgttgttttactcagatgattatctatgtattctca |
33970723 |
T |
|
| Q |
319 |
tatgctgcttgtgcgttttctgtatgcagattaaagttgggccaattttaattgctctcaatcccttcaaagatgtacagatttacggaaacgattatgt |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33970724 |
tatgctgcttgtgcgttttctgtatgcagagtaaagctgggccaattttaattgctctcaatcccttcaaagatgtacagatttacggaaatgattatgt |
33970823 |
T |
|
| Q |
419 |
ctctgctt |
426 |
Q |
| |
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|||||||| |
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|
| T |
33970824 |
ctctgctt |
33970831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 22791006 - 22791074
Alignment:
| Q |
200 |
tatttgaacgagccctcagttcttcacaatcttcgggttagatattctcaagatatgatttatgtatgt |
268 |
Q |
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|||||||| ||||| || ||||||||||||||| || |||||||||||| || ||||||||||||||| |
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| T |
22791006 |
tatttgaatgagccatcggttcttcacaatcttaggtttagatattctcgggagatgatttatgtatgt |
22791074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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