View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_12 (Length: 389)
Name: NF8551_low_12
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 37604051 - 37604401
Alignment:
| Q |
20 |
gcacatgtgtcgtaaatcatgaatttagattctctacagtcaaaatatctatgcagtcacgaagtcagtgtgtctgaatctctcgatctgaaatttggac |
119 |
Q |
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| T |
37604051 |
gcacatgtgtcgtaaatcatggatttagattctctacagtcaaaatatatatgcagtcacgaagtcagtatatctgaatctctcaatctgaaatctggac |
37604150 |
T |
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| Q |
120 |
gactcatatttnnnnnnnnnnnnnnnnntttaagtcgtctgatcaagatccaacaaaatatacttatttaggatgtgacaataaaaatgtaatgatggta |
219 |
Q |
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| T |
37604151 |
gattcatatttaaaaaataaattaaaaatttgagtcgtctgatcaagatccaaaaaaatagacttatttacgatgtgacaatacaaatgtaatgatggta |
37604250 |
T |
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| Q |
220 |
gagaatttgaatcccttaagaggcaattgagtctacgttagaatgggttgaggtattgctaaaatggtccatggagacatataggctgtaactgatctga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604251 |
gagaatttgaatcccttaagaggcaattgagtctaccttagaatgggttgaggtattgctaaaatggtccatggagacatataggctgtaactgatctga |
37604350 |
T |
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| Q |
320 |
cttgaagggaaaacggctctgcattttcagaattattttcttgtggcaaat |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604351 |
cttgaagggaaaacggctctgcattttcagaattattttcttgtggcaaat |
37604401 |
T |
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