View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_14 (Length: 380)
Name: NF8551_low_14
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 36577521 - 36577156
Alignment:
| Q |
1 |
tcatatacatttgctgacaaggccttcaattgtgggagatccttatttacctttgatatcatattctccaatttgacattaaattccaaagccactatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36577521 |
tcatatacatttgctgacaaggccttcaattgtggaagctccttatttaactttgatatcatattctccaatttgacattaaattccaaagccactatat |
36577422 |
T |
|
| Q |
101 |
tgtatttttcatagcaacgatgaaagccaccaaaaatatttatagccctttctaatgggagacaccccataggaataagaccagttatggataatttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36577421 |
tgtatttttcatagcaacgatgaaagccaccaaaaatatttatagccctttctaatggaagacaccccataggaataagaccagttatggctaatttcct |
36577322 |
T |
|
| Q |
201 |
agcaccaagtgagtataattgcctaaagaaattctcagcaatcccaattaaataatcttgatattgtgatattgtgtaacggaatcttagtgttgtgaaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36577321 |
agcaccaagtgagtataattgcctaatgaaattctcagcaataccaattaaataatcttgatattgtgatattgtgtaacggaatcttagtgttgtgaaa |
36577222 |
T |
|
| Q |
301 |
ccatagtaatttccaaggaaatcatcggttcctaaacttattatgtacaatgcttcacttatgatt |
366 |
Q |
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| T |
36577221 |
ccatagtagtttccaaggaaatcattggttcctaaacttattatgtataatgcttcacttatgatt |
36577156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 36566624 - 36566262
Alignment:
| Q |
1 |
tcatatacatttgctgacaaggccttcaattgtgggagatccttatttacctttgatatcatattctccaatttgacattaaattccaaagccactatat |
100 |
Q |
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|||||| ||||||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||| ||| |
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| T |
36566624 |
tcatatgcatttgccgacaaagccttcaattgtggtaactccttatttagctttgatatcatattctccaacttggcattaaattgcaaagccactctat |
36566525 |
T |
|
| Q |
101 |
tgtatttttcatagcaacgatgaaagccaccaaaaatatttatagccctttctaatgggagacaccccataggaataagaccagttatggataatttcct |
200 |
Q |
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|||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
36566524 |
tgtatttttcattgcaagcatg---gtcaccaaaaatatttgtagccctttctaatgggagacacccaataggaacaagaccagttatagataatttcct |
36566428 |
T |
|
| Q |
201 |
agcaccaagtgagtataattgcctaaagaaattctcagcaatcccaattaaataatcttgatattgtgatattgtgtaacggaatcttagtgttgtgaaa |
300 |
Q |
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|||||||||||||| ||||| |||| ||||| ||||||||| | | || | |||||||||||||||||| ||| || | | | | ||||| |||| |
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| T |
36566427 |
agcaccaagtgagtgtaattttctaacgaaatcctcagcaatatccactagaaaatcttgatattgtgatacggtgaaatgaagttgtcttgttgggaaa |
36566328 |
T |
|
| Q |
301 |
ccatagtaatttccaaggaaatcatcggttcctaaacttattatgtacaatgcttcacttatgatt |
366 |
Q |
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|||||||||| |||||||||||| |||||||| ||||||| ||| ||||| |||||||||||| |
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|
| T |
36566327 |
atatagtaattttcaaggaaatcatttgttcctaagcttattaggtataatgcctcacttatgatt |
36566262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36630120 - 36629853
Alignment:
| Q |
1 |
tcatatacatttgctgacaaggccttcaattgtgggagatccttatttacctttgatatcatattctccaatttgacattaaattccaaagccactatat |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||| ||| |
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| T |
36630120 |
tcatatgcatttgccgacaaagccttcaattgtggtaactccttatttagctttgatatcatattctccaacttggcattaaattgcaaagccactctat |
36630021 |
T |
|
| Q |
101 |
tgtatttttcatagcaacgatgaaagccaccaaaaatatttatagccctttctaatgggagacaccccataggaataagaccagttatggataatttcct |
200 |
Q |
| |
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|||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
36630020 |
tgtatttttcattgcaagcatg---gtcaccaaaaatatttgtagccctttctaatgggagacacccaataggaacaagaccagttatagataatttcct |
36629924 |
T |
|
| Q |
201 |
agcaccaagtgagtataattgcctaaagaaattctcagcaatcccaattaaataatcttgatattgtgata |
271 |
Q |
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|||||||||||||| ||||| |||| ||||| ||||||||| | | || | |||||||||||||||||| |
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| T |
36629923 |
agcaccaagtgagtgtaattttctaacgaaatcctcagcaatatccactagaaaatcttgatattgtgata |
36629853 |
T |
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