View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8551_low_16 (Length: 357)
Name: NF8551_low_16
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 29594972 - 29594638
Alignment:
| Q |
1 |
gagaagttaaattcacatcagcgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29594972 |
gagaagttaaattcacatcaacgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
29594873 |
T |
|
| Q |
101 |
gatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaat |
200 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
29594872 |
gaggtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaat |
29594773 |
T |
|
| Q |
201 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
29594772 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaacc |
29594673 |
T |
|
| Q |
301 |
aatcctttgataaaattagtgtgattgaaaaagct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
29594672 |
aatcctttgataaaattagtgtgattgaaaaagct |
29594638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 11353724 - 11353611
Alignment:
| Q |
68 |
ttgacggaagttaaacaatgtcaaataataggggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatg |
167 |
Q |
| |
|
||||||||||||||| ||| ||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| || || |
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| T |
11353724 |
ttgacggaagttaaaaggtgttaaacagtaggggaggtcattgttaaataagaaaatagagggggtgtctgtgtcatttaacgagaccttaagggaggtg |
11353625 |
T |
|
| Q |
168 |
aatgtatttttccc |
181 |
Q |
| |
|
|| ||||||||||| |
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| T |
11353624 |
aacgtatttttccc |
11353611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52077865 - 52077526
Alignment:
| Q |
1 |
gagaagttaaattcacatcagcgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52077865 |
gagaagttaaattcacatcaacgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
52077766 |
T |
|
| Q |
101 |
gatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
52077765 |
gaggtcaatgttaaataagaaaatagagggggtgtctgtgtcttttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaat |
52077666 |
T |
|
| Q |
201 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
52077665 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaacc |
52077566 |
T |
|
| Q |
301 |
aatcctttgataaaattagtgtgattgaaaaagctgatga |
340 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| |||| |
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|
| T |
52077565 |
agtcatttgataaaattagtgtgattgaaaaagcttatga |
52077526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52088667 - 52088328
Alignment:
| Q |
1 |
gagaagttaaattcacatcagcgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52088667 |
gagaagttaaattcacatcaacgagaggcaacaatagtttttctttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataataggg |
52088568 |
T |
|
| Q |
101 |
gatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
52088567 |
gaggtcaatgttaaataagaaaatagagggggtgtctgtgtcgtttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaat |
52088468 |
T |
|
| Q |
201 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
52088467 |
gtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagacctgccctcttaaatttgtgtaatgcaaaacc |
52088368 |
T |
|
| Q |
301 |
aatcctttgataaaattagtgtgattgaaaaagctgatga |
340 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
52088367 |
agtcatttgataaaattagtgtgattgaaaaagcttatga |
52088328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 29058404 - 29058745
Alignment:
| Q |
1 |
gagaagttaaattcacatcagcgagaggcaacaat-agtttttc--tttttcttgtttgataaaaataacttgacggaagttaaacaatgtcaaataata |
97 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
29058404 |
gagaagttaaatt-acatcaacgagaggcaacaattagttttttctttttttttgtttgataaaaataacttgacggaagttaaacagtgtcaaataata |
29058502 |
T |
|
| Q |
98 |
ggggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgag |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||| || |
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|
| T |
29058503 |
ggggaggtcaatgttaaataagaaaatagtgggggtgtctgtgtcatttaaagagacctcaagagagattaatgtatttttctcaaacctctgtaattag |
29058602 |
T |
|
| Q |
198 |
aatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaa |
297 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
29058603 |
aatgtgggaagcttaaatattttcagatatgatgaaaccttgtaaataaaatagaagactgagttgcaagatctgctctcttaaatttgtgtaatgcaaa |
29058702 |
T |
|
| Q |
298 |
accaatcctttgataaaattagtgtgattgaaaaagctgatga |
340 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29058703 |
gccagtcctttgataaaattagtgtgattgaaaaagcttatga |
29058745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 43898996 - 43899059
Alignment:
| Q |
120 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaa |
183 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| |||||||| || ||||||||| |
|
|
| T |
43898996 |
aaaatagagggggtgtgagttacatttcaagagacctcaagggagatgaatatagttttcccaa |
43899059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 4564436 - 4564336
Alignment:
| Q |
57 |
ataaaaataacttgacggaagttaaacaatgtcaaataataggggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacct |
156 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| |||| |||| |||| ||||| |||| |||||||| ||||||| ||| | |||||||||||||| |
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|
| T |
4564436 |
ataaaaataatttgacggaagttaaacgatgtcaaacaatatgggaggtcattgttagataaaaaaatagaaggggtgtttgtattatttaaagagacct |
4564337 |
T |
|
| Q |
157 |
c |
157 |
Q |
| |
|
| |
|
|
| T |
4564336 |
c |
4564336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 4558211 - 4558105
Alignment:
| Q |
53 |
tttgataaaaataacttgacggaagttaaacaatgtcaaataataggggatgtcaatgttaaataagaaaa-tagagggggtgtctgtgtcatttaaaga |
151 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||| || |||||| |||| |||||||||| |||| || | ||||||| ||||| ||||||||| |
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|
| T |
4558211 |
tttgataaaaataatttgatcaaagttaaaggatgttaaacaacaggggaggtcattgttaaataaaaaaaataaaaggggtgtttgtgttatttaaaga |
4558112 |
T |
|
| Q |
152 |
gacctca |
158 |
Q |
| |
|
||||||| |
|
|
| T |
4558111 |
gacctca |
4558105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 12142073 - 12142133
Alignment:
| Q |
120 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
181 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
12142073 |
aaaatagagggg-tgtcggcgtcatttaaagagacctcaagggagatgagtgtatttttccc |
12142133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 44539564 - 44539625
Alignment:
| Q |
120 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||| || || |||||||||||||||| |
|
|
| T |
44539564 |
aaaatagagggggtgtctctgtcatttaaagaaaactcaggggaggtgaatgtatttttccc |
44539625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 51288555 - 51288654
Alignment:
| Q |
240 |
taaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcctttgataaaattagtgtgattgaaaaagctgatg |
339 |
Q |
| |
|
|||||||||||||| | |||||| ||| | |||||||||||||||| | || |||||||| ||| || ||||| |||||||||||||||||||| ||| |
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|
| T |
51288555 |
taaataaaatagaaaattgagtttcaaattccgctctcttaaatttgtatgatccaaaaccagtccctttataaa-ttagtgtgattgaaaaagcttatg |
51288653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 24153249 - 24153192
Alignment:
| Q |
124 |
tagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
181 |
Q |
| |
|
||||| |||||||||| |||||| || |||||||||||||| ||| |||| ||||||| |
|
|
| T |
24153249 |
tagagtgggtgtctgtctcattttaatagacctcaaggaaggtgagtgtaattttccc |
24153192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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