View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_17 (Length: 353)

Name: NF8551_low_17
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_17
NF8551_low_17
[»] chr5 (3 HSPs)
chr5 (1-336)||(11441255-11441590)
chr5 (1-231)||(11451773-11452001)
chr5 (283-336)||(11452073-11452126)
[»] chr4 (1 HSPs)
chr4 (1-217)||(29913100-29913307)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 11441255 - 11441590
Alignment:
Q  1 cctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactcggtcattccataaccctaaaaagaaacaatttcac 100  Q
    ||||| || ||||||||| |||| ||||| |||||||||||||||||| ||| ||  || ||||| ||||||||||||||||||||||||||||||| ||    
T  11441255 cctagcgaggaatagttgcgaaatttttctgtattgaaaccgcatgctcctactgtgcccgactcagtcattccataaccctaaaaagaaacaattttac 11441354  T
Q  101 ggatgcacacccttaaaataatctaggaaaacaacattattaacatcatcaagcaaagttcaactttgatagtccagaacatgttgtatatgtgaacacc 200  Q
     | |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |    
T  11441355 agctgcacatccttaaaa-aatctaggaaaacaacattattaacatcatcaagtaaagttcaactttgatagtccagaacttgttgtgtatgtgaacatc 11441453  T
Q  201 tatggcacaaaaagagtgtttaccagctgctatt-nnnnnnntaatttcaaagcaagtgaaatcagcatttagataccaacaacaataacaatgaaaaat 299  Q
     |||||||||||||||||| || |||||||||||         || |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11441454 aatggcacaaaaagagtgtgtatcagctgctattaaaaaaaaaaaattcaaagctagtgaaatcagcatttagataccaacaacaataacaatgaaaaat 11441553  T
Q  300 aactcaagcaatcatataaatgatggatcatgacttg 336  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11441554 aactcaagcaatcatataaattatggatcatgacttg 11441590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11451773 - 11452001
Alignment:
Q  1 cctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactcggtcattccataaccctaaaaagaaacaatttcac 100  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| || | ||| ||| || ||||| |||||||||||||||||||||||| ||||   ||    
T  11451773 cctagtgaggaatagttgtgaaacttatcagtattgaagccgcgtgttcctactgcgcccgactcagtcattccataaccctaaaaagaagcaatcatac 11451872  T
Q  101 ggatgcacacccttaaaataatctaggaaaacaacattattaacatcatcaagcaaagttcaactttgatagtccagaacatgttgtatatgtgaacacc 200  Q
     | |||||| |||||||  ||||||||||| ||||||| ||| |||    ||| ||||||||||| | || |||||||||||| |||| |||| || |||    
T  11451873 agctgcacatccttaaa--aatctaggaaatcaacatttttaccatacagaagtaaagttcaactattatggtccagaacatgctgtaaatgttaatacc 11451970  T
Q  201 tatggcacaaaaagagtgtttaccagctgct 231  Q
     |||||||| ||| ||| |||| ||||||||    
T  11451971 aatggcacataaatagtatttatcagctgct 11452001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 11452073 - 11452126
Alignment:
Q  283 caataacaatgaaaaataactcaagcaatcatataaatgatggatcatgacttg 336  Q
    ||||| ||| |||||||||||||| |||| |||||||||||||| |||||||||    
T  11452073 caatagcaaagaaaaataactcaatcaattatataaatgatggagcatgacttg 11452126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29913307 - 29913100
Alignment:
Q  1 cctagtgaagaatagttgtgaaacttttcagtattgaaaccgcatgctgctaatgcaccagactcggtcattccataaccctaaaaagaaacaatttcac 100  Q
    |||| ||| ||||||||||||||||||||||||||||| || | || | | | ||||   ||||||||||||||||||||||||||||||||||| | ||    
T  29913307 cctattgacgaatagttgtgaaacttttcagtattgaagccacgtgttcccactgcagtcgactcggtcattccataaccctaaaaagaaacaatcttac 29913208  T
Q  101 ggatgcacacccttaaaataatctaggaaaacaacattattaacatcatcaagcaaagttcaactttgatagtccagaacatgttgtatatgtgaacacc 200  Q
    ||         ||   |||||||||||||||||||||||||| ||| | |||  ||||||||||||| || ||| ||||  ||||||  || |||||| |    
T  29913207 gg---------ctattaataatctaggaaaacaacattattatcataaacaaataaagttcaacttttatggtctagaatttgttgtggatatgaacatc 29913117  T
Q  201 tatggcacaaaaagagt 217  Q
     | ||||||||||||||    
T  29913116 aacggcacaaaaagagt 29913100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University