View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8551_low_2 (Length: 825)
Name: NF8551_low_2
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 8289950 - 8290314
Alignment:
| Q |
1 |
atttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggnnnnnnnnttaattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8289950 |
atttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggaaaaaaaattaattg |
8290049 |
T |
|
| Q |
101 |
caaacacaaactaactaaaaacttctatttacactaagcaaacttggtttaaattagtaatctcaaccggtttttggtgtgtcatatgcatagttnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8290050 |
caaacacaaactaactaaaaacttctatttacactaaacaaacttggtttgaattagtaatctcaaccggtttttggtgtgtcatatgcatagttaaaaa |
8290149 |
T |
|
| Q |
201 |
nnnnnnnctaatgtgaaacactcttgcagaataagctaataacaacctatgaacttgttgagacttgagactttt-aacatgtccaccttattctatcaa |
299 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8290150 |
aaaaaaactaatgtgaaacactcttgcagcata------taacaacctatgaacttgttgagacttgagactttttaacatgtccaccttattctatcaa |
8290243 |
T |
|
| Q |
300 |
attttgtccatttcatgcactgcatcagaatcgaatatatatcattttttgggaacagtcgaatatatatat |
371 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8290244 |
attttgtccatttcatgcaatgcatcagaatcgaatatatatca-tttttgggaacagtcgaatatatatat |
8290314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 362 - 581
Target Start/End: Original strand, 8290331 - 8290551
Alignment:
| Q |
362 |
atatatatatctgcttgtatggta-attggttctcattacacggttaccttttctttatctcctttcaatcttacccttttaacttttattggtgctgct |
460 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8290331 |
atatatatatctgcttgtatggtttattggttctcattacacggttaccttttctttatctcctttcaatcttacccttttaacttttattggtgctgct |
8290430 |
T |
|
| Q |
461 |
acnnnnnnngggtgctatcgtcctttttaattcattatgttttatttaatctttactttggtattactttaaggaaaatgctaaaatgtattataacact |
560 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8290431 |
actttttttgggtgctattgtcctttttaattcattatgttttatttaatctttactttggtattactttaaggaaaatgttaaaatgtattataacact |
8290530 |
T |
|
| Q |
561 |
tgttaaggaaacaacaaatat |
581 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8290531 |
tgttaaggaaacaacaaatat |
8290551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University