View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_20 (Length: 338)

Name: NF8551_low_20
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_20
NF8551_low_20
[»] chr7 (2 HSPs)
chr7 (167-320)||(43939049-43939202)
chr7 (1-123)||(43939308-43939446)
[»] chr1 (4 HSPs)
chr1 (8-123)||(32626905-32627015)
chr1 (9-123)||(24489802-24489911)
chr1 (9-123)||(24498136-24498245)
chr1 (9-123)||(24485307-24485416)
[»] chr5 (2 HSPs)
chr5 (9-123)||(34289973-34290082)
chr5 (9-123)||(34296607-34296716)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 43939202 - 43939049
Alignment:
Q  167 gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtattatggtggggt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939202 gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtattatggtggggt 43939103  T
Q  267 tttgttgaactatctgtcaccaagcacagtggagaaactagtggtgatagcaag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939102 tttgttgaactatctgtcaccaagcacagtggagaaactagtggtgatagcaag 43939049  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 43939446 - 43939308
Alignment:
Q  1 tttggtgttaaaagggaatgataattctatgattctgatggccattgtgtatggcaatatatataaata----------------gttacagattgatac 84  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||                |||||||| ||||||    
T  43939446 tttggtcttaaaagggaatgataattcaatgattctgatggccatagtgtatggcaatatatatatatatatatatatatatatagttacagaatgatac 43939347  T
Q  85 acagtatagaaaactaactcctactattagtggagcgta 123  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43939346 acagtatagaaaactaactcctactattagtggagcgta 43939308  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 32626905 - 32627015
Alignment:
Q  8 ttaaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcct 106  Q
    |||||||||||||||||||| || ||| |||||||||||  ||||||||||||||||      |||||||| ||||||||||||||||||||||||||||    
T  32626905 ttaaaagggaatgataattcaattgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcct 32626998  T
Q  107 actattagtggagcgta 123  Q
    |||||||||||||||||    
T  32626999 actattagtggagcgta 32627015  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 24489802 - 24489911
Alignment:
Q  9 taaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactccta 107  Q
    ||||||||||||||||||| || ||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||    
T  24489802 taaaagggaatgataattcaattgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactccta 24489895  T
Q  108 ctattagtggagcgta 123  Q
    ||||||||||||||||    
T  24489896 ctattagtggagcgta 24489911  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 24498136 - 24498245
Alignment:
Q  9 taaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactccta 107  Q
    ||||||||||||||||||| || ||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||    
T  24498136 taaaagggaatgataattcaattgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactccta 24498229  T
Q  108 ctattagtggagcgta 123  Q
    ||||||||||||||||    
T  24498230 ctattagtggagcgta 24498245  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 24485307 - 24485416
Alignment:
Q  9 taaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactccta 107  Q
    ||||||||||||||||||| || ||  |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||    
T  24485307 taaaagggaatgataattcaattgacactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactccta 24485400  T
Q  108 ctattagtggagcgta 123  Q
    ||||||||||||||||    
T  24485401 ctattagtggagcgta 24485416  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 34290082 - 34289973
Alignment:
Q  9 taaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactccta 107  Q
    ||||||||||||||||||| || ||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||    
T  34290082 taaaagggaatgataattcaattgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactccta 34289989  T
Q  108 ctattagtggagcgta 123  Q
    ||||||||||||||||    
T  34289988 ctattagtggagcgta 34289973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 34296716 - 34296607
Alignment:
Q  9 taaaagggaatgataattctat-gattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactccta 107  Q
    ||||||||||||||||||| || ||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||    
T  34296716 taaaagggaatgataattcaattgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactccta 34296623  T
Q  108 ctattagtggagcgta 123  Q
    ||||||||||||||||    
T  34296622 ctattagtggagcgta 34296607  T

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