View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_26 (Length: 255)

Name: NF8551_low_26
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_26
NF8551_low_26
[»] chr8 (2 HSPs)
chr8 (21-126)||(36588325-36588430)
chr8 (21-90)||(36589274-36589343)
[»] chr5 (2 HSPs)
chr5 (21-126)||(3936681-3936786)
chr5 (21-90)||(3937948-3938017)
[»] chr4 (4 HSPs)
chr4 (21-126)||(45618387-45618492)
chr4 (22-90)||(45619618-45619686)
chr4 (21-90)||(32699201-32699270)
chr4 (37-96)||(32698112-32698171)
[»] chr1 (1 HSPs)
chr1 (21-123)||(35911742-35911844)
[»] chr6 (1 HSPs)
chr6 (37-90)||(1171540-1171593)
[»] chr7 (2 HSPs)
chr7 (37-102)||(5610276-5610341)
chr7 (21-86)||(36748300-36748365)
[»] chr3 (1 HSPs)
chr3 (21-90)||(42447674-42447743)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 36588325 - 36588430
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaatgtacatgcggcatacagatggca 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||    
T  36588325 aaaatggtccctggacccacttttttgctgatttatcacatttttacttatgtgttagttgctgactatgcaaaaatgtacatgtggcatacaaatggca 36588424  T
Q  121 attgcc 126  Q
    ||||||    
T  36588425 attgcc 36588430  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 36589343 - 36589274
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    ||||||||||||  |||||||||||||||||||| ||| | || | | || ||| |||||||||||||||    
T  36589343 aaaatggtccctaaacccacttttttgctgatttgtcacaattctgcctacgtggcagttgctgactgtg 36589274  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 3936681 - 3936786
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaatgtacatgcggcatacagatggca 120  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||    
T  3936681 aaaatggttcctggacccacttttttgctgatttatcacatttttacttatgtgttagttgctgactatgcaaaaatgtacatgtggcatacaaatggca 3936780  T
Q  121 attgcc 126  Q
    ||||||    
T  3936781 attgcc 3936786  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 3938017 - 3937948
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    |||||||||||| ||||||||||||||||||||| ||| |||| | | || ||| || ||||||||||||    
T  3938017 aaaatggtccctagacccacttttttgctgatttgtcacatttctgcctacgtggcaattgctgactgtg 3937948  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 45618387 - 45618492
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaatgtacatgcggcatacagatggca 120  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| | |||||| ||||||    
T  45618387 aaaacggtccttggacccacttttttgctgatttatcacatttttacttatgtgtcagctgctgactatgcaaaaatgtacatgtgacatacaaatggca 45618486  T
Q  121 attgcc 126  Q
    ||||||    
T  45618487 attgcc 45618492  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 45619686 - 45619618
Alignment:
Q  22 aaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    ||||||||||| ||||||||||||||||||||||||| |||| | | || ||| |||||||||||||||    
T  45619686 aaatggtccctagacccacttttttgctgatttatcacatttctgcctacgtggcagttgctgactgtg 45619618  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 32699270 - 32699201
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    ||||| |||||| | ||||||||||||||||||| ||| |||| ||| || |||||||||||||| ||||    
T  32699270 aaaatagtccctaggcccacttttttgctgatttgtcacatttctacctacgtgtcagttgctgattgtg 32699201  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 32698112 - 32698171
Alignment:
Q  37 ccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaa 96  Q
    |||||||||||||||||| ||| |||||| ||||||||    ||||||||||||||||||    
T  32698112 ccacttttttgctgatttgtcacatttttgcttatgtggtccttgctgactgtgcaaaaa 32698171  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 35911844 - 35911742
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaatgtacatgcggcatacagatggca 120  Q
    |||||||||||||| |||||||||| | |||||| ||| |||| | | ||  || ||| ||||||| ||||||| ||||||||| ||||| ||| |||||    
T  35911844 aaaatggtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtggca 35911745  T
Q  121 att 123  Q
    |||    
T  35911744 att 35911742  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 1171593 - 1171540
Alignment:
Q  37 ccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    |||||||||||||||||| ||| |||| ||| || |||||||||||||||||||    
T  1171593 ccacttttttgctgatttgtcacatttctacctacgtgtcagttgctgactgtg 1171540  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 5610276 - 5610341
Alignment:
Q  37 ccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtgcaaaaatgtaca 102  Q
    |||||||||||||||||| ||| |||||| |||||||| |   | ||||||||||||||| |||||    
T  5610276 ccacttttttgctgatttgtcacatttttgcttatgtggcccatactgactgtgcaaaaacgtaca 5610341  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 36748300 - 36748365
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgac 86  Q
    ||||| ||| |||||||||||||||||||||||| ||  |||||| | |||||| ||| |||||||    
T  36748300 aaaatagtctctggacccacttttttgctgatttgtctcatttttgcctatgtggcagatgctgac 36748365  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42447743 - 42447674
Alignment:
Q  21 aaaatggtccctggacccacttttttgctgatttatcatatttttacttatgtgtcagttgctgactgtg 90  Q
    ||||| |||| |||||||||||| |||||||||| ||  |||||| | |||||| ||| |||||||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtgacagatgctgactgtg 42447674  T

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