View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_27 (Length: 253)
Name: NF8551_low_27
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43324260 - 43324019
Alignment:
| Q |
1 |
tggctactaattttactttgctgttccttctatcattgacgaagacagatgtttcaaagggcaatgccaatggaaccccttataaccattttcacaaaac |
100 |
Q |
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| T |
43324260 |
tggctactaattttactttgctgttccttctatcattgacgaagacagatgtttcaaagggcaatgccaatggaaccccttataaccattttcacaaaac |
43324161 |
T |
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| Q |
101 |
aatccgagtgtaattccctgttcttgctctttcacttttcttatccataatattttttgcataccatgagtgaattaatgtcatgtattttatagaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43324160 |
aatccgagtgtaattccctgttcttgctctttcacttttcttatccataatattttttgcataccatgagtgaattaatgtcatgtattttatagaaaaa |
43324061 |
T |
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| Q |
201 |
tggaaaatgttgcaagggtaagaagtctatgattttgctgat |
242 |
Q |
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|||||||||||| |||||||| | |||||||||||||||||| |
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| T |
43324060 |
tggaaaatgttgtaagggtaaaacgtctatgattttgctgat |
43324019 |
T |
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