View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_28 (Length: 253)

Name: NF8551_low_28
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_28
NF8551_low_28
[»] scaffold0045 (3 HSPs)
scaffold0045 (21-148)||(75633-75759)
scaffold0045 (143-253)||(75785-75898)
scaffold0045 (60-100)||(77452-77491)
[»] chr4 (10 HSPs)
chr4 (143-253)||(96644-96757)
chr4 (143-245)||(35789561-35789666)
chr4 (142-253)||(52981113-52981227)
chr4 (143-253)||(39590981-39591094)
chr4 (156-211)||(29687986-29688041)
chr4 (215-248)||(26121985-26122018)
chr4 (142-198)||(2310803-2310859)
chr4 (142-198)||(12396895-12396951)
chr4 (142-210)||(15445475-15445543)
chr4 (142-198)||(52880853-52880909)
[»] chr3 (23 HSPs)
chr3 (143-253)||(19622882-19622995)
chr3 (142-198)||(55442633-55442689)
chr3 (142-198)||(55443571-55443627)
chr3 (143-253)||(38639058-38639171)
chr3 (142-209)||(39288449-39288516)
chr3 (142-192)||(48826807-48826857)
chr3 (142-198)||(5416237-5416293)
chr3 (142-198)||(5417069-5417125)
chr3 (142-210)||(11482996-11483064)
chr3 (142-198)||(39287509-39287565)
chr3 (142-198)||(40502236-40502292)
chr3 (142-198)||(52705329-52705385)
chr3 (142-198)||(53047936-53047992)
chr3 (142-198)||(53049058-53049114)
chr3 (142-198)||(53342755-53342811)
chr3 (142-171)||(7820429-7820458)
chr3 (142-211)||(32974231-32974300)
chr3 (142-198)||(19579315-19579371)
chr3 (142-198)||(32973178-32973234)
chr3 (142-198)||(35633266-35633322)
chr3 (142-186)||(48034048-48034092)
chr3 (142-198)||(48035345-48035401)
chr3 (142-198)||(52292633-52292689)
[»] chr7 (10 HSPs)
chr7 (143-242)||(38408248-38408350)
chr7 (142-211)||(38001543-38001612)
chr7 (142-200)||(41616663-41616721)
chr7 (142-198)||(41126278-41126334)
chr7 (142-210)||(48755557-48755625)
chr7 (142-197)||(34557436-34557491)
chr7 (215-253)||(4858307-4858345)
chr7 (209-253)||(4168812-4168856)
chr7 (142-198)||(34558322-34558378)
chr7 (142-198)||(36673857-36673913)
[»] chr2 (9 HSPs)
chr2 (143-253)||(4701450-4701563)
chr2 (142-198)||(33837776-33837832)
chr2 (165-248)||(36422689-36422775)
chr2 (142-200)||(3255897-3255955)
chr2 (142-198)||(3665263-3665319)
chr2 (142-198)||(41313288-41313344)
chr2 (142-198)||(4630105-4630161)
chr2 (209-253)||(7982421-7982465)
chr2 (194-253)||(41295196-41295258)
[»] chr8 (10 HSPs)
chr8 (153-248)||(39544980-39545078)
chr8 (145-253)||(118987-119098)
chr8 (143-245)||(45195775-45195880)
chr8 (168-253)||(2419940-2420028)
chr8 (186-248)||(34616217-34616282)
chr8 (143-210)||(37472443-37472510)
chr8 (212-253)||(31872767-31872808)
chr8 (185-253)||(41521399-41521470)
chr8 (143-171)||(19913532-19913560)
chr8 (212-248)||(44607284-44607320)
[»] chr1 (19 HSPs)
chr1 (142-194)||(52741527-52741579)
chr1 (142-198)||(1873875-1873931)
chr1 (143-198)||(9119842-9119897)
chr1 (143-253)||(33793819-33793932)
chr1 (142-198)||(2236852-2236908)
chr1 (142-210)||(34531702-34531770)
chr1 (142-198)||(34532723-34532779)
chr1 (142-198)||(48973237-48973293)
chr1 (143-198)||(44977261-44977316)
chr1 (143-197)||(9592278-9592332)
chr1 (168-253)||(22169182-22169269)
chr1 (177-253)||(37623324-37623403)
chr1 (142-211)||(48935118-48935187)
chr1 (142-198)||(1061367-1061423)
chr1 (142-198)||(2237999-2238055)
chr1 (142-198)||(9123420-9123476)
chr1 (209-253)||(27690592-27690636)
chr1 (142-198)||(35683094-35683150)
chr1 (142-198)||(48934280-48934336)
[»] scaffold0038 (2 HSPs)
scaffold0038 (142-199)||(25961-26018)
scaffold0038 (142-198)||(26937-26993)
[»] chr6 (8 HSPs)
chr6 (142-199)||(28225463-28225520)
chr6 (142-211)||(19367756-19367825)
chr6 (142-198)||(8447260-8447316)
chr6 (142-198)||(8456064-8456120)
chr6 (142-198)||(19368539-19368595)
chr6 (142-198)||(28226439-28226495)
chr6 (142-198)||(2138658-2138714)
chr6 (142-198)||(26584058-26584114)
[»] chr5 (11 HSPs)
chr5 (143-248)||(15857586-15857694)
chr5 (142-211)||(32521725-32521794)
chr5 (142-210)||(15509234-15509302)
chr5 (142-198)||(22650649-22650705)
chr5 (142-211)||(4566990-4567059)
chr5 (142-211)||(4567982-4568051)
chr5 (142-171)||(42979487-42979516)
chr5 (142-210)||(7345399-7345467)
chr5 (209-253)||(7427924-7427968)
chr5 (142-198)||(20991670-20991726)
chr5 (142-198)||(32521943-32521999)
[»] scaffold1827 (1 HSPs)
scaffold1827 (143-191)||(1087-1135)
[»] scaffold0025 (1 HSPs)
scaffold0025 (214-253)||(54705-54744)
[»] scaffold0046 (1 HSPs)
scaffold0046 (143-240)||(24791-24891)
[»] scaffold0177 (1 HSPs)
scaffold0177 (142-198)||(1794-1850)


Alignment Details
Target: scaffold0045 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 75633 - 75759
Alignment:
Q  21 gacaatgcataatacatgtaagatgcggattcaaacatgtttgggttaataattgagcaaatgtgagtgcaaattcttttaagttttaaatttattttat 120  Q
    |||||| ||||| ||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  75633 gacaatacataagacatgtaaggtccggattcaaacatgtttgggttaaaaattgagcaa-tgtgagtgcaaattcttttaagttttagttttattttat 75731  T
Q  121 tgaatttggcttaatatattgttttggt 148  Q
    ||||||||| |||||| |||||||||||    
T  75732 tgaatttggtttaatacattgttttggt 75759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 75785 - 75898
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatatttt 239  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||   || |||||||||||||||||| |||||||||    
T  75785 tttggtcctctaattataaagtgtctcaaactgatccattatgtcttttgtcgttatctattttggtcctcgcagttagttttttgatgtctaatatttt 75884  T
Q  240 taatatgataataa 253  Q
    ||||||||||||||    
T  75885 taatatgataataa 75898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 77452 - 77491
Alignment:
Q  60 tttgggttaataattgagcaaatgtgagtgcaaattctttt 100  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  77452 tttggtttaataattgagcaa-tgtgagtgcaaattctttt 77491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 96757 - 96644
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatatttt 239  Q
    |||||||| ||||||||||||||| | ||| || |||||||||||||||||||||||  |||||||   || |||||||||||||||||| |||||||||    
T  96757 tttggtcccctaactataaagtgtcttaaattggtcccttatgtcttttgtcgttatatattttggtcctcgcagttagttttttgatgtctaatatttt 96658  T
Q  240 taatatgataataa 253  Q
    ||||||||||||||    
T  96657 taatatgataataa 96644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 35789666 - 35789561
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatatttt 239  Q
    ||||||||  |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||   ||||||||| |||||| |||| |||||||||    
T  35789666 tttggtcccgtaactataaagtgtttcaaactgatcccttatattttttgtcgttatctattttggtcatcacagttaatttttttatgtctaatatttt 35789567  T
Q  240 taatat 245  Q
    ||||||    
T  35789566 taatat 35789561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 52981227 - 52981113
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatattt 238  Q
    ||||||||| | |||||| ||||||||||||||| ||||||||||||| ||| |||  |  ||||||   || ||||||||||||| |||| ||||||||    
T  52981227 ttttggtccccaaactatcaagtgtttcaaactggtcccttatgtcttctgttgtttactgttttggtcctcgcagttagtttttttatgtctaatattt 52981128  T
Q  239 ttaatatgataataa 253  Q
    |||||||||| ||||    
T  52981127 ttaatatgattataa 52981113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 39590981 - 39591094
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatatttt 239  Q
    |||||||| ||||||||||||||| |||||||| ||||||||| | | |||||||  |  |||| |   || ||||||||||||| |||| |||||||||    
T  39590981 tttggtcccctaactataaagtgtctcaaactggtcccttatgccatctgtcgtttactgttttagtcctcgcagttagtttttttatgtctaatatttt 39591080  T
Q  240 taatatgataataa 253  Q
    ||||||||| ||||    
T  39591081 taatatgattataa 39591094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 29688041 - 29687986
Alignment:
Q  156 ctataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||||| | ||||| ||||||||||||||||||||||| |  |||||||||    
T  29688041 ctataaagtgtcttaaactcatcccttatgtcttttgtcgttacctcttttggtca 29687986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 26121985 - 26122018
Alignment:
Q  215 ttagttttttgatgtttaatatttttaatatgat 248  Q
    ||||||||||||||| ||||||||||||||||||    
T  26121985 ttagttttttgatgtctaatatttttaatatgat 26122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 2310859 - 2310803
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||| ||| ||||  || |||||||||||||||| |||||    
T  2310859 ttttggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgccgtta 2310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12396951 - 12396895
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||| ||| |||||    
T  12396951 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtctattgccgtta 12396895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 15445475 - 15445543
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    ||||||||| |||| |||||||||| ||||  || || ||||||||||||| |||||||  ||||||||    
T  15445475 ttttggtcccctaattataaagtgtctcaatttggtctcttatgtcttttgccgttatcttttttggtc 15445543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 52880853 - 52880909
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||| |||||||||||| |||||    
T  52880853 ttttggtcccctaactataaagtgtctcaatttggtcctttatgtcttttgccgtta 52880909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 19622995 - 19622882
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    |||||||  ||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||   |||||| ||||||||||| |||||||||    
T  19622995 tttggtctcctaactataaagtgtctcaaactggtcccttatgtcttctgtcgttatctattttggtcatcgcagttaattttttgatgtctaatatttt 19622896  T
Q  240 taatatgataataa 253  Q
    ||||||||| ||||    
T  19622895 taatatgattataa 19622882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 55442633 - 55442689
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  55442633 ttttggtcccctaactataaagtgtctcaatttgatcccttatgtcttttgttgtta 55442689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 55443627 - 55443571
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||||||||||||    
T  55443627 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgtta 55443571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 38639058 - 38639171
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    ||||||||  ||||||||||||||||| |  || || ||||||||||  |||||| || |||||||||    |||||||||||||||| | |||||||||    
T  38639058 tttggtcccttaactataaagtgtttcgatttggtctcttatgtcttccgtcgttctctattttggtcctcgcagttagttttttgatatctaatatttt 38639157  T
Q  240 taatatgataataa 253  Q
    ||| ||||| ||||    
T  38639158 taaaatgattataa 38639171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 39288516 - 39288449
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggt 209  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| ||||||||||  |||||||    
T  39288516 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttatgtcgttatctcttttggt 39288449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 48826857 - 48826807
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttg 192  Q
    ||||||||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  48826857 ttttggtcccctagctataaagtgtgtcaaattgatcccttatgtcttttg 48826807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 5416237 - 5416293
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||| ||| ||||  || ||||||||||||||||||||||    
T  5416237 ttttggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgtta 5416293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 5417125 - 5417069
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||| | || ||||||||||||||||| ||||    
T  5417125 ttttggtcccctaactataaagtgtctcagattggtcccttatgtcttttgttgtta 5417069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 11483064 - 11482996
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    |||||||||  |||||||||||||| | ||  ||||| |||||||||||||||||||||  ||||||||    
T  11483064 ttttggtcccttaactataaagtgtcttaatttgatctcttatgtcttttgtcgttatctcttttggtc 11482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 39287509 - 39287565
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||||||||||||||||||| ||||  || |||||||||| || ||||||||    
T  39287509 ttttggtcctctaactataaagtgtctcaatttggtcccttatgttttctgtcgtta 39287565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 40502292 - 40502236
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||| | ||||  | |||||||||||||||||||||||    
T  40502292 ttttggtcccctaactataaagtatctcaatttaatcccttatgtcttttgtcgtta 40502236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 52705385 - 52705329
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||||||| ||||    
T  52705385 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgttgtta 52705329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 53047936 - 53047992
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| ||||||||    
T  53047936 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 53047992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 53049114 - 53049058
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| ||||||||    
T  53049114 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 53049058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 53342755 - 53342811
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||| ||||||||||||||||||    
T  53342755 ttttggtcccctaactataaagtgtctcaatttggtccattatgtcttttgtcgtta 53342811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 7820429 - 7820458
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaa 171  Q
    ||||||||||||||||||||||||||||||    
T  7820429 ttttggtcctctaactataaagtgtttcaa 7820458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 32974300 - 32974231
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || ||||| |  |||||||||    
T  32974300 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtca 32974231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 19579371 - 19579315
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||||  |||||||||||||| ||||  || ||||||||||||| ||||||||    
T  19579371 ttttggtcccttaactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 19579315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 32973178 - 32973234
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || |||||    
T  32973178 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgtta 32973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 35633266 - 35633322
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||||| |||||||||| ||| ||||  ||||||||||||| ||||| |||||    
T  35633266 ttttggtcctataactataaaatgtctcaatttgatcccttatgttttttgccgtta 35633322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 48034048 - 48034092
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgt 186  Q
    ||||||||||||||||||||||||| ||||  ||||| |||||||    
T  48034048 ttttggtcctctaactataaagtgtctcaatttgatctcttatgt 48034092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 48035401 - 48035345
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || |||||    
T  48035401 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttatgccgtta 48035345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 52292633 - 52292689
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  |  |||| |||||||||||||||||    
T  52292633 ttttggtcccctaactataaagtgtctcaatttagtcccgtatgtcttttgtcgtta 52292689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 38408350 - 38408248
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttgg---tcacagttagttttttgatgtttaatatttt 239  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||| || ||||||| |||||||   ||| ||||||||||| ||||| |||||||||    
T  38408350 tttggtcctctaactataaagtgtctcaaattggtcccttatgtcttctgccgttatctattttggtcctcaaagttagtttttggatgtctaatatttt 38408251  T
Q  240 taa 242  Q
    |||    
T  38408250 taa 38408248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 38001543 - 38001612
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||  |||||||||    
T  38001543 ttttggtcctctaactataaagtgtttcaatttggtcccttatgtcttttgtcgttatctcttttggtca 38001612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 41616663 - 41616721
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatc 200  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||||||||||||||    
T  41616663 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatc 41616721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 41126278 - 41126334
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| ||||||||    
T  41126278 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 41126334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 48755625 - 48755557
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    |||||||||| |||||||||| ||| ||||  ||||||||||||| ||||| ||||| | |||||||||    
T  48755625 ttttggtcctataactataaaatgtctcaatttgatcccttatgttttttgccgttacctattttggtc 48755557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 34557436 - 34557491
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtt 197  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||| ||||    
T  34557436 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgtt 34557491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 4858345 - 4858307
Alignment:
Q  215 ttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  4858345 ttagttttttgatgtctaatatttttaatatgattataa 4858307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 4168856 - 4168812
Alignment:
Q  209 tcacagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||    
T  4168856 tcacaattagttttttgatggataatatttttaatatgattataa 4168812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 34558378 - 34558322
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||| | ||||  || |||||||||||||||| |||||    
T  34558378 ttttggtcccctaactataaagtatctcaatttggtcccttatgtcttttgccgtta 34558322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 36673913 - 36673857
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||| ||| ||||  || ||||||||||||| ||||||||    
T  36673913 ttttggtcccctaactataaaatgtctcaatttggtcccttatgtcttctgtcgtta 36673857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 4701563 - 4701450
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttg---gtcacagttagttttttgatgtttaatatttt 239  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||| || |||| ||  |||||    || || ||||||||||||||| |||||||||    
T  4701563 tttgatcccctaactataaagtgtctcaaactgatcccttatgtcttctgccgttttctgttttgatcctcgcaattagttttttgatgtctaatatttt 4701464  T
Q  240 taatatgataataa 253  Q
    ||| ||||| ||||    
T  4701463 taacatgattataa 4701450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 33837832 - 33837776
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  | |||||||||||||||||||||||    
T  33837832 ttttggtcccctaactataaagtgtctcaatttaatcccttatgtcttttgtcgtta 33837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 36422775 - 36422689
Alignment:
Q  165 gtttcaaactgatcccttatgtcttttgtcgttatcgattttggt---cacagttagttttttgatgtttaatatttttaatatgat 248  Q
    |||||||| || |||||||||| || |||||||||| ||||||||   | ||| ||||||||| |||| ||||||||||||||||||    
T  36422775 gtttcaaattggtcccttatgtattatgtcgttatctattttggtactctcagatagttttttaatgtctaatatttttaatatgat 36422689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 3255955 - 3255897
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatc 200  Q
    ||||||||| ||||||||||||||||||||  || || ||||||||||||| |||||||    
T  3255955 ttttggtcccctaactataaagtgtttcaatttggtctcttatgtcttttgccgttatc 3255897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 3665263 - 3665319
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||||||||||||||| ||||||||  || ||||||||||||| || |||||    
T  3665263 ttttggtcctctaactataaaatgtttcaatttggtcccttatgtcttctgccgtta 3665319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 41313344 - 41313288
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| | ||  ||||||||||||||||||| |||||    
T  41313344 ttttggtcccctaactataaagtgtctgaatttgatcccttatgtcttttgccgtta 41313288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 4630161 - 4630105
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || || |||||||||||||| ||||    
T  4630161 ttttggtcccctaactataaagtgtctcaatttggtctcttatgtcttttgttgtta 4630105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 7982421 - 7982465
Alignment:
Q  209 tcacagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||    
T  7982421 tcacaattagttttttgatggataatatttttaatatgattataa 7982465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 41295196 - 41295258
Alignment:
Q  194 cgttatcgattttggtca---cagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||||| ||||||||||   ||||||||||||||||  ||||||||| ||||||||| ||||    
T  41295196 cgttatctattttggtcatcgcagttagttttttgattcttaatatttgtaatatgattataa 41295258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 39544980 - 39545078
Alignment:
Q  153 taactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc---acagttagttttttgatgtttaatatttttaatatgat 248  Q
    |||||||||||||| ||||||   |||||||||| || || | ||||| |||||||||   ||||||| |||||||||||||||||||||||| |||||    
T  39544980 taactataaagtgtctcaaacaagtcccttatgttttctgccattatctattttggtcctcacagttaattttttgatgtttaatatttttaaaatgat 39545078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 119098 - 118987
Alignment:
Q  145 tggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatattttta 241  Q
    |||||| |||| |||||||||| |||||||| |||||||||| | |||| |||| | ||| || |||   |||||||||||||||||| ||||  |||||    
T  119098 tggtcccctaattataaagtgtctcaaactggtcccttatgtatattgtggttacctattctgatcatcacagttagttttttgatgtctaatgatttta 118999  T
Q  242 atatgataataa 253  Q
    ||||||| ||||    
T  118998 atatgattataa 118987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 45195880 - 45195775
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    ||||||||  ||| |||||||||| ||||  |  ||| |||| |||| || ||||||| ||||||||||   |||||| |||||||||||||||||||||    
T  45195880 tttggtcccttaaatataaagtgtctcaatttagtccattatatcttctgccgttatctattttggtcatcacagttaattttttgatgtttaatatttt 45195781  T
Q  240 taatat 245  Q
    ||||||    
T  45195780 taatat 45195775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 2419940 - 2420028
Alignment:
Q  168 tcaaactgatcccttatgtcttttgtcgttatcgattttggtc---acagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||| || |||||||| | || || ||||||| |||||||||   |||||||||||||| |||||| |||||||||||||||| ||||    
T  2419940 tcaaattggtcccttatatattctgccgttatctattttggtcttcacagttagtttttttatgtttgatatttttaatatgattataa 2420028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 34616217 - 34616282
Alignment:
Q  186 tcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttttaatatgat 248  Q
    ||||||||||||  | ||||||||||   | ||||||||||| |||||||||||||||||||||||    
T  34616217 tcttttgtcgtttaccattttggtcatttccgttagttttttaatgtttaatatttttaatatgat 34616282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 37472443 - 37472510
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    |||||||||||||||||||||||| ||||  || |||| || |||||||||||||  | |||||||||    
T  37472443 tttggtcctctaactataaagtgtctcaatttggtcccataagtcttttgtcgtttaccattttggtc 37472510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 31872808 - 31872767
Alignment:
Q  212 cagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||||||||||| |||||| |||||||||||||||| ||||    
T  31872808 cagttagtttttttatgtttgatatttttaatatgattataa 31872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 41521399 - 41521470
Alignment:
Q  185 gtcttttgtcgttatcgattttggtc---acagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    |||||||||||||||| | |||||||   ||| ||| ||||||||||  |||||||||||||||||| ||||    
T  41521399 gtcttttgtcgttatctactttggtcctcacaattaattttttgatggataatatttttaatatgattataa 41521470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 19913532 - 19913560
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaa 171  Q
    |||||||||||||||||||||||||||||    
T  19913532 tttggtcctctaactataaagtgtttcaa 19913560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 44607320 - 44607284
Alignment:
Q  212 cagttagttttttgatgtttaatatttttaatatgat 248  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  44607320 cagttagttttttaatgtctaatatttttaatatgat 44607284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 52741527 - 52741579
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtc 194  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  52741527 ttttggtcctctaactataaagtgtctcaaattgatcccttatgtcttctgtc 52741579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 1873931 - 1873875
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  ||||||||||||||||||| |||||    
T  1873931 ttttggtcccctaactataaagtgtctcaatttgatcccttatgtcttttgccgtta 1873875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 9119842 - 9119897
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||||||||||||||||||| ||||  || ||| ||||||||||||||||||    
T  9119842 tttggtcctctaactataaagtgtctcaatttggtccgttatgtcttttgtcgtta 9119897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 33793819 - 33793932
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    |||||||| |||| |||||||||| |||||| |  |||||| ||  | || ||||||| ||||||||||   |||||||||||||||||| ||||||  |    
T  33793819 tttggtcccctaattataaagtgtctcaaaccggccccttaagttatctgccgttatctattttggtcatcgcagttagttttttgatgtctaatataat 33793918  T
Q  240 taatatgataataa 253  Q
    ||||||||| ||||    
T  33793919 taatatgattataa 33793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 2236852 - 2236908
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| ||||||||    
T  2236852 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 2236908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 34531702 - 34531770
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    ||||||||||||||||||||| ||| ||||  || || |||||||||| ||||||||||  ||||||||    
T  34531702 ttttggtcctctaactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctcttttggtc 34531770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 34532779 - 34532723
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||| |||||    
T  34532779 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgtta 34532723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 48973237 - 48973293
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||| |||| ||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  48973237 ttttagtcccctaactataaagtgtctcaatttgatcccttatgtcttctgtcgtta 48973293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 44977261 - 44977316
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||| ||||||||||||||| | |||||| ||||||||||||| || |||||    
T  44977261 tttggtcccctaactataaagtgtcttaaactggtcccttatgtcttctgccgtta 44977316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 9592278 - 9592332
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtt 197  Q
    |||||||| ||||||||||||||||||||  ||||||| ||  ||||||||||||    
T  9592278 tttggtcccctaactataaagtgtttcaatttgatcccataaatcttttgtcgtt 9592332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 22169269 - 22169182
Alignment:
Q  168 tcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    |||||||| |||||||||| || || ||||||| |||||||||    |||||||||||||  ||||| |||||||||||||||| ||||    
T  22169269 tcaaactggtcccttatgtattctgccgttatctattttggtcttcgcagttagttttttt-tgtttgatatttttaatatgattataa 22169182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 37623324 - 37623403
Alignment:
Q  177 tcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    |||||||| | ||||  ||||||| ||||||||||   ||||||||||||||||  ||||||||| ||||||||| ||||    
T  37623324 tcccttatatattttaccgttatctattttggtcatcgcagttagttttttgattcttaatatttgtaatatgattataa 37623403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 48935187 - 48935118
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || ||||| |  |||||||||    
T  48935187 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtca 48935118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 1061367 - 1061423
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| | ||||||||||||| ||||  || |||||||||| |||||||||||    
T  1061367 ttttggtccccaaactataaagtgtctcaatttggtcccttatgttttttgtcgtta 1061423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 2238055 - 2237999
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||||  |||||||||||||| ||||  || ||||||||||||| ||||||||    
T  2238055 ttttggtcccataactataaagtgtctcaatttggtcccttatgtcttctgtcgtta 2237999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 9123476 - 9123420
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||||||  |||||||||||||||||||  ||  || ||||||||||||||||||    
T  9123476 ttttggtcccttaactataaagtgtttcaatttggaccgttatgtcttttgtcgtta 9123420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 27690636 - 27690592
Alignment:
Q  209 tcacagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    |||||||||||||||||||  ||||||||| ||||||||| ||||    
T  27690636 tcacagttagttttttgattcttaatatttgtaatatgattataa 27690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 35683094 - 35683150
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || |||||    
T  35683094 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgtta 35683150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 48934280 - 48934336
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||| ||| |||||    
T  48934280 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtctattgacgtta 48934336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 25961 - 26018
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttat 199  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||||||||||    
T  25961 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttat 26018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 26993 - 26937
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  |||||||| |||||||||| |||||    
T  26993 ttttggtcccctaactataaagtgtctcaatttgatccctaatgtcttttgccgtta 26937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 28225463 - 28225520
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttat 199  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||||||||||    
T  28225463 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttat 28225520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 19367756 - 19367825
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||||||| |||| |  |||||||||    
T  19367756 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgttgttaccttttttggtca 19367825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 8447260 - 8447316
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||| |||||    
T  8447260 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgtta 8447316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 8456064 - 8456120
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||| |||||    
T  8456064 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgtta 8456120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 19368595 - 19368539
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||||||||||||||||||| ||||  || || |||||||||| ||||||||    
T  19368595 ttttggtcctctaactataaagtgtctcaatttggtctcttatgtcttctgtcgtta 19368539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 28226495 - 28226439
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  |||||||| |||||||||| |||||    
T  28226495 ttttggtcccctaactataaagtgtctcaatttgatccctaatgtcttttgccgtta 28226439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 2138714 - 2138658
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  |  ||||||||||||| ||||||||    
T  2138714 ttttggtcccctaactataaagtgtctcaatttagtcccttatgtcttctgtcgtta 2138658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 26584114 - 26584058
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || | |||||||||||||| |||||    
T  26584114 ttttggtcccctaactataaagtgtctcaatttggttccttatgtcttttgccgtta 26584058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 15857694 - 15857586
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    ||||||||  |||||||||||||||||||  || |||| ||  |||| |||||||  | ||||||||||   | ||||||||||| ||||||||||||||    
T  15857694 tttggtcccttaactataaagtgtttcaatttgttcccataaatcttatgtcgtttaccattttggtcatctccgttagttttttaatgtttaatatttt 15857595  T
Q  240 taatatgat 248  Q
    | |||||||    
T  15857594 tgatatgat 15857586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 32521725 - 32521794
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||| ||||||||||||||| ||||  |||||| |||||||||||| ||||| |  |||||||||    
T  32521725 ttttggtcccctaactataaagtgtctcaatttgatccattatgtcttttgccgttacctcttttggtca 32521794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 15509234 - 15509302
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || ||||| | |||||||||    
T  15509234 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtc 15509302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 22650705 - 22650649
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||||||||| ||||  || |||||||||||||||| |||||    
T  22650705 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgtta 22650649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 4566990 - 4567059
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||| ||| ||||||||||||||| ||||  || ||||||||||||| |||||||| |  |||||||||    
T  4566990 ttttgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtca 4567059  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 4568051 - 4567982
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca 211  Q
    ||||||||| ||||||||||||||| ||||  || ||||||||||||| || | ||| | ||||||||||    
T  4568051 ttttggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgcctttacctattttggtca 4567982  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 42979487 - 42979516
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaa 171  Q
    ||||||||||||||||||||||||||||||    
T  42979487 ttttggtcctctaactataaagtgtttcaa 42979516  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 7345467 - 7345399
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtc 210  Q
    ||||||||||||||||||||||||| ||||  || |||| ||  | |||||||||||||  ||||||||    
T  7345467 ttttggtcctctaactataaagtgtctcaatttggtcccataaatattttgtcgttatctcttttggtc 7345399  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 7427968 - 7427924
Alignment:
Q  209 tcacagttagttttttgatgtttaatatttttaatatgataataa 253  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||    
T  7427968 tcacaattagttttttgatggataatatttttaatatgattataa 7427924  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 20991726 - 20991670
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    |||||| || ||||||||||| ||| ||||  || ||||||||||||||||||||||    
T  20991726 ttttggccccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgtta 20991670  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 32521999 - 32521943
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| ||||||||| ||||| ||||  || |||||| |||||||||||||||    
T  32521999 ttttggtcccctaactatagagtgtctcaatttggtcccttgtgtcttttgtcgtta 32521943  T

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Target: scaffold1827 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 1135 - 1087
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtctttt 191  Q
    |||||||||||||||||||||||| ||||  || |||||||||||||||    
T  1135 tttggtcctctaactataaagtgtctcaatttggtcccttatgtctttt 1087  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 54705 - 54744
Alignment:
Q  214 gttagttttttgatgtttaatatttttaatatgataataa 253  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  54705 gttagttttttgatgtctaatatttttaatatgattataa 54744  T

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Target: scaffold0046 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 24891 - 24791
Alignment:
Q  143 tttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgttatcgattttggtca---cagttagttttttgatgtttaatatttt 239  Q
    |||||||| |||| |||||||||||||||  || |||||||||||||    ||||| | ||||||||||   | ||||||||||| |||| |||||||||    
T  24891 tttggtcccctaattataaagtgtttcaatttggtcccttatgtcttcctccgttacctattttggtcatctccgttagttttttaatgtctaatatttt 24792  T
Q  240 t 240  Q
    |    
T  24791 t 24791  T

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Target: scaffold0177 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 1794 - 1850
Alignment:
Q  142 ttttggtcctctaactataaagtgtttcaaactgatcccttatgtcttttgtcgtta 198  Q
    ||||||||| |||| |||||||||| ||||  || ||||||||||||| ||||||||    
T  1794 ttttggtcccctaattataaagtgtctcaatttggtcccttatgtcttctgtcgtta 1850  T

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