View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_29 (Length: 252)
Name: NF8551_low_29
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 47685532 - 47685755
Alignment:
| Q |
19 |
ctgctatatacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagt |
118 |
Q |
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| T |
47685532 |
ctgctatatacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagt |
47685631 |
T |
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| Q |
119 |
tgcactgtgcccactctataactcacccatccctgcctttggatggattcannnnnnnnnnnnnnnnnactttcaaaactgctgctgctcctacctgaga |
218 |
Q |
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| T |
47685632 |
tgcactgtgcccactctataactcacccatccctgcctttggatggattcatttttgtttttgtttttactttcaaaactgctgctgctcctacctgaga |
47685731 |
T |
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| Q |
219 |
atgtatatgacgtgtgcctctctg |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
47685732 |
atgtatatgacgtgtgcctctctg |
47685755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 12282067 - 12282265
Alignment:
| Q |
44 |
tagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcatctatttcttccagttgcactgtgcccactctataactca |
143 |
Q |
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||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
12282067 |
tagatgctctagctaatccttagtggccggcttatgtctgttaaatattctcat---tcatctattgcttccaattgcactgtgcccactctataactca |
12282163 |
T |
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| Q |
144 |
cccatccctgcctttggatggattcannnnnnnnnnnnnnnnnactttcaaaa---ctgctgctgctcctacctgagaatgtatatgacgtgtgcctctc |
240 |
Q |
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| T |
12282164 |
atcatccctgtctttggttggattcatttttgtttttgtttttactttcaaaactgctgctgctgctcctacctaagaatgtatatgacatgtgcctctc |
12282263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 10561914 - 10561950
Alignment:
| Q |
66 |
gtggctgccttatgtctgctaaatattctcattcatc |
102 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
10561914 |
gtggctgccttatatctgctaaatattctcattcatc |
10561950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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