View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_3 (Length: 661)
Name: NF8551_low_3
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 38582731 - 38582297
Alignment:
| Q |
1 |
aacttatgtctgcataaggtaaggtaaatatactaagcatctgtttttggtgattgagcaatatattaataaaactttgacaaatcctatgtttatatat |
100 |
Q |
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| T |
38582731 |
aacttatgtctgcataaggtaaggtaaatatactaagcatctgtttttggtgattgagcaatatattaataaaactttgacaaatcctatgtttatatat |
38582632 |
T |
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| Q |
101 |
gctcccctcacactctcataacttccaaaactatatatttacaagtgatagttctaaatatatgattaagcatcaacaagactggtgctttttcctccac |
200 |
Q |
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| T |
38582631 |
gctcccctcacactctcataacttccaaaactatatatttacaagtgatagttctaaatatatgattaagcatcaacaagactggtgctttttcctccac |
38582532 |
T |
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| Q |
201 |
aaaaatctgtgatttaagtgtggatttccctacttcaaagttcaaaatatatctttacattgaagctcatagatagaattgcagggtaattaagcactgt |
300 |
Q |
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| T |
38582531 |
aaaaatctgtgatttaagtgtggatttccctacttcaaagttcaaaatatatctttacattgaagctcatagatagaattgcagggtaattaagcactct |
38582432 |
T |
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| Q |
301 |
ggattggtgcnnnnnnnncctaccaaaaattgtcctctaaggaaagnnnnnnnnnntaaaactaggagactttaattatggattggtggattctttgagg |
400 |
Q |
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| T |
38582431 |
ggattggtgcttttgtttcctaccaaaaattgtcctctaaggaaagaaaaaataaataaaactaggagactttaattatggattggtggattctttgagg |
38582332 |
T |
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| Q |
401 |
caggtgtgtaatccattgtatccaacaagtcatca |
435 |
Q |
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| T |
38582331 |
caggtgtgtaatccattgtatccaacaagtcatca |
38582297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 474 - 642
Target Start/End: Complemental strand, 38582258 - 38582090
Alignment:
| Q |
474 |
cccttcatggtttagcttaaacaagctactttgacccttttcttctccatctttagtatctctcaagtttctagctgcaagataccaaaagaaaacgcat |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38582258 |
cccttcatggtttagcttaaacaagctactttgacccttttcatctccatcattagtatctctcaagtttctagctgcaagataccaaaagaaaacacat |
38582159 |
T |
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| Q |
574 |
aaattataggctctgaatatacaaatattaataaaatgaatctgaatcttctacgactactgtacggtg |
642 |
Q |
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| T |
38582158 |
aaattataggctctgaatatacaaatattaatgaaacgaatctgaatcttctacgactaatgtatggtg |
38582090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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