View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_31 (Length: 245)
Name: NF8551_low_31
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 8594247 - 8594443
Alignment:
| Q |
15 |
tggtggtgcgcggctaaacaaggaggattggcagtttaagtggtagaannnnnnnnnnnnattgatgtggtgtttgagaggaacaagtgttattcatttt |
114 |
Q |
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| T |
8594247 |
tggtggtgcgcggctaaacaaggaggattggcagtttaagtcgtaga---gttttttttcattgatgtggtgtttgagaggaacaagtgttattcatttt |
8594343 |
T |
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| Q |
115 |
gttactcttcttctctacccttccttgcctctcctatttttatatatcagtagaagtctagagtttatgccacttttttatgaagaaaatgccaactaac |
214 |
Q |
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| T |
8594344 |
gttactcttcttctctacccatccttgcctctcctatttttatatatcagtagaagtctaaagtttatgccacttttttatgaagaaaatgccaactaac |
8594443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 8557364 - 8557162
Alignment:
| Q |
15 |
tggtggtgcgcggctaaacaaggaggattggcagtttaagtggtagaannnnnnnnnnnn-attgatgtggtgtttgagaggaacaagtgttattcattt |
113 |
Q |
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| T |
8557364 |
tggtggtgcgcggctaaacaaggaggattggcagtttaagtggtagagtttttttttttttattgatgtggtgtttgagaggaataagtgtgattctttt |
8557265 |
T |
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| Q |
114 |
tgttactcttcttctctacccttccttgcctctcctatttttat--atatcagtagaagtctagagtttatgccacttttttatgaagaaaatgccaact |
211 |
Q |
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| T |
8557264 |
tgctactcttcttctctacccttccttgcctctcctatttttatatatatcagtagaattctagagtttatgccacatatttatgaagaaaatgccaact |
8557165 |
T |
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| Q |
212 |
aac |
214 |
Q |
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||| |
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| T |
8557164 |
aac |
8557162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 8646531 - 8646669
Alignment:
| Q |
77 |
tgatgtggtgtttgagaggaacaagtgttattcattttgttactcttcttctctacccttccttgcctctccta-tttttatatatcagtagaagtctag |
175 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
8646531 |
tgatgtggtgtttgaaaggaacaagtgttattctttttgctactattcttctctacccttccttgcttctcctaatttttatatatcaatagaagtctag |
8646630 |
T |
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| Q |
176 |
agtttatgccacttttttatgaagaaaatgccaactaac |
214 |
Q |
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| T |
8646631 |
agtttatgccacatttttatgaagaaaatgccaactaac |
8646669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 8612115 - 8611981
Alignment:
| Q |
81 |
gtggtgtttgagaggaacaagtgttattcattttgttactcttcttctctacccttccttgcctctcct-atttttatatatcagtagaagtctagagtt |
179 |
Q |
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||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
8612115 |
gtggtgtttgaaaggaacaagtgttattctttttgctactattcttctctacccttccttgcctctcctaatttttatatatcaatagaagtctagagtt |
8612016 |
T |
|
| Q |
180 |
tatgccacttttttatgaagaaaatgccaactaac |
214 |
Q |
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|| ||||| |||||||||||||||||||||||||| |
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| T |
8612015 |
taggccacatttttatgaagaaaatgccaactaac |
8611981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 8566903 - 8567057
Alignment:
| Q |
78 |
gatgtggtgtttgagaggaacaagtgttattcattttgttactcttcttctctacccttccttgcctctcctatttttata----tatcagtagaagtct |
173 |
Q |
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|||||||||||| ||| |||||| |||| ||| ||||| |||| ||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
8566903 |
gatgtggtgttttagatgaacaactgttgttctttttgctactattcttctctacccttccttccctctcctatttttatatcagtagatgtagaagtct |
8567002 |
T |
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| Q |
174 |
agagtt--tatgccacttttttatgaagaaaatgccaactaacagtactgagaac |
226 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
8567003 |
agagtttatatgccacatttttatgaagaaaatgccaactaactgtactgggaac |
8567057 |
T |
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