View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_39 (Length: 228)
Name: NF8551_low_39
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33366048 - 33366275
Alignment:
| Q |
1 |
gattctcgaatgcaactttttcacacaagttactcaaatagttggaagtttataaatatcaaagcacgatctgaattctatgcctaaaaataaatgaatt |
100 |
Q |
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| T |
33366048 |
gattctcgaatgcaattttttcacacaatttactcaaatagttggaagtttataaacatcaaagcacgatctgaattctatgcctaaaaataaatgaatt |
33366147 |
T |
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| Q |
101 |
ggataagnnnnnnnncaccaccaatatacttgatatttcttgacttggatatttcaattagtaatttctttcttctcgttgaaaacttgttgctaggttg |
200 |
Q |
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| T |
33366148 |
ggataagaaaaaaaacaccaccaatatacttgatatttcttgacttggatatttcaattagtaatttctttcttctcgttgaaaacttgttgctaggttg |
33366247 |
T |
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| Q |
201 |
tcaatttacataattcttccggtcacat |
228 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
33366248 |
tcaatttacatacttcttccggtcacat |
33366275 |
T |
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