View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_4 (Length: 618)

Name: NF8551_low_4
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_4
NF8551_low_4
[»] chr3 (5 HSPs)
chr3 (1-601)||(40353847-40354447)
chr3 (532-590)||(19632001-19632059)
chr3 (540-590)||(15539055-15539105)
chr3 (536-590)||(19659898-19659952)
chr3 (533-590)||(10725979-10726036)
[»] scaffold0093 (1 HSPs)
scaffold0093 (532-601)||(51823-51892)
[»] scaffold0111 (1 HSPs)
scaffold0111 (532-590)||(30292-30350)
[»] chr5 (4 HSPs)
chr5 (532-601)||(26867868-26867937)
chr5 (532-590)||(26727733-26727791)
chr5 (532-590)||(26132692-26132750)
chr5 (560-601)||(13456971-13457012)
[»] chr7 (9 HSPs)
chr7 (532-590)||(16094747-16094805)
chr7 (532-601)||(16175214-16175283)
chr7 (532-586)||(16196656-16196710)
chr7 (532-601)||(20148615-20148684)
chr7 (532-601)||(17161287-17161357)
chr7 (530-590)||(6460139-6460199)
chr7 (537-590)||(29741219-29741272)
chr7 (149-193)||(44139463-44139508)
chr7 (530-574)||(13551860-13551904)
[»] scaffold0001 (1 HSPs)
scaffold0001 (532-590)||(155004-155062)
[»] chr6 (8 HSPs)
chr6 (532-590)||(12463728-12463786)
chr6 (538-590)||(12487756-12487808)
chr6 (532-590)||(14354311-14354369)
chr6 (532-590)||(23294320-23294378)
chr6 (532-590)||(23350272-23350330)
chr6 (530-579)||(22545878-22545927)
chr6 (533-590)||(14566617-14566674)
chr6 (530-574)||(17913647-17913691)
[»] chr4 (7 HSPs)
chr4 (532-590)||(17959878-17959936)
chr4 (530-590)||(19605821-19605881)
chr4 (532-590)||(11776232-11776290)
chr4 (530-579)||(2493811-2493860)
chr4 (530-575)||(10112357-10112402)
chr4 (533-590)||(15711427-15711484)
chr4 (536-588)||(16571214-16571266)
[»] scaffold0417 (1 HSPs)
scaffold0417 (532-601)||(3613-3682)
[»] chr8 (2 HSPs)
chr8 (532-601)||(25263274-25263343)
chr8 (532-590)||(21695105-21695164)
[»] scaffold1114 (1 HSPs)
scaffold1114 (532-579)||(1913-1960)
[»] chr2 (2 HSPs)
chr2 (533-590)||(21654214-21654271)
chr2 (535-590)||(28774234-28774289)
[»] scaffold0039 (1 HSPs)
scaffold0039 (530-590)||(106006-106066)
[»] scaffold0007 (1 HSPs)
scaffold0007 (540-596)||(204870-204926)
[»] scaffold0115 (1 HSPs)
scaffold0115 (530-577)||(36913-36960)
[»] chr1 (1 HSPs)
chr1 (535-576)||(18621979-18622020)
[»] scaffold0184 (1 HSPs)
scaffold0184 (546-582)||(10581-10617)


Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 40353847 - 40354447
Alignment:
Q  1 ttttatttatacaataaatgtactagggtaatctaatattttcacaatcattggcttaagcgatgaacaataaatcaacacgatcatgcatatataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  40353847 ttttatttatacaataaatgtactagggtaatctaatattttcacaatcattggcttaagcaatgaacaataaatcaacacgaacatgcatatacaaaac 40353946  T
Q  101 agttgaaaagattatgttttcatgagtataaacatgtaaaatcctgatgtgatgatatactgatccgaatttattatgttgattgttaaatataatatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40353947 agttgaaaagattatgttttcatgagtataaacatgtaaaatcctgatgtgatgatatactgatccgaatttattatgttgattgttaaatataatatat 40354046  T
Q  201 aatacccataataccaacctgcatttcttagttcttcctccatataatacccataatttccaatcctttcaaggtcaaagcggtgttcaactttcatagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40354047 aatacccataataccaacctgcatttcttagttcttcctccatataatacccataatttccaatcctttcaaggtcaaagcggtgttcaacttccatagg 40354146  T
Q  301 aactttttaaaaagaattgtagttgagtggaaccattttagtttgattaagcacaaaaacttcaggctttcggaaaatcggtaaaaagtttaaaggatgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  40354147 aactttttaaaaagaattgtagttgagtggaaccattttagtttgattaaacacaaaaactgcaggctttcgaaaaatcggtaaaaagtttaaaggatgt 40354246  T
Q  401 attaaaaaggaggtcatgattgaccttatggacgaagtagaatttttgtggtagaaaacacaccccttattattttaatcatataatgtttaatccctca 500  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  40354247 attgaaaaggaggtcatggttgaccttatggacgaagtagaatttttgtggtagaaaacaccccccctattattttaatcatataatgtttaatccctca 40354346  T
Q  501 ccaccccatgaattcccatcaaatcttgtaaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40354347 ccaccccatgaattcccatcaaatcttgtaaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaa 40354446  T
Q  601 c 601  Q
    |    
T  40354447 c 40354447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 590
Target Start/End: Original strand, 19632001 - 19632059
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||    
T  19632001 ataagttgttttgatgatttttgcttaattgagtgtaaatcatgaattgatgagtgatt 19632059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 15539105 - 15539055
Alignment:
Q  540 ttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  15539105 ttttgatgatttttgcttatttgagtgtaaatcatgaattgatgagtgatt 15539055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 590
Target Start/End: Original strand, 19659898 - 19659952
Alignment:
Q  536 gttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||||||||    
T  19659898 gttgttttgatgatttttgcttaattgagtgtaaatcatgaattgatgagtgatt 19659952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 533 - 590
Target Start/End: Complemental strand, 10726036 - 10725979
Alignment:
Q  533 taagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||||||||||||  ||| || |||||||| ||||||||| |||||||||    
T  10726036 taagttgttttgatgattttttattaattgagtgtaaatcatgaattggtgagtgatt 10725979  T

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Target: scaffold0093 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 51892 - 51823
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  51892 ataagttgttttgatgatttttgcttaattaagtgtaaaccatgaattgatgagtgattattgttggaac 51823  T

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Target: scaffold0111 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 532 - 590
Target Start/End: Original strand, 30292 - 30350
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30292 ataagttgttttgatgatttttgcttatttaagtgtaaatcatgaattgatgagtgatt 30350  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 26867937 - 26867868
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  26867937 ataagttgttttgatgttttttgcttaattaagtgtaaaccatgaattgatgagtgattattgttggaac 26867868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 26727791 - 26727733
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||| |||||||||||||||| |  |||||||| ||||||||| |||||||||    
T  26727791 ataagttgttatgatgatttttgcttactagagtgtaaatcatgaattggtgagtgatt 26727733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 26132750 - 26132692
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||| ||||| |||| |||||| | ||||||||||| ||||||||| |||||||||    
T  26132750 ataagttattttggtgatgtttgctcaattaagtgtaaatcatgaattggtgagtgatt 26132692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 601
Target Start/End: Complemental strand, 13457012 - 13456971
Alignment:
Q  560 ttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||||||||| |||||||||||||||  |||||||||    
T  13457012 ttaagtgtaaaccatcaattgatgagtgattattgttggaac 13456971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 16094805 - 16094747
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  16094805 ataagttgttttgatgattttcgcttaattaagtgtaaaccatgaattgatgagtgatt 16094747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 16175283 - 16175214
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||  |||||||||    
T  16175283 ataagttgttttgatcatttttgcttaatcaagtgtaaaccatgaattgatgagtgattattgttggaac 16175214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 16196710 - 16196656
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagt 586  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  16196710 ataagttgttttgatgatttttgcttaatcaagtgtaaaccatgaattgatgagt 16196656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 20148684 - 20148615
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||  |||||||||    
T  20148684 ataagttgctttggtgatttttgcttaattaagtgtaaaccatgaattgacgagtgattattgttggaac 20148615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 601
Target Start/End: Original strand, 17161287 - 17161357
Alignment:
Q  532 ataagttgt-tttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||||  |||||||||    
T  17161287 ataagttgtgtttggtgatttttgcttaattaagtgtgaacgatgaattgatgagtgattattgttggaac 17161357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 590
Target Start/End: Original strand, 6460139 - 6460199
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||| |||  |||||||||    
T  6460139 aaataagttgttttggtgatttttgctcaattaagtgtaaaccatggatttgtgagtgatt 6460199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 29741219 - 29741272
Alignment:
Q  537 ttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||| ||||| |||||| |||||||| ||||||||| || ||||||    
T  29741219 ttgttttgatgaattttgattatttgagtgtaaatcatgaattggtgtgtgatt 29741272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 44139508 - 44139463
Alignment:
Q  149 gtgatgat-atactgatccgaatttattatgttgattgttaaatat 193  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  44139508 gtgatgatgatactgatccgaatttataatgttgatcgttaaatat 44139463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 13551904 - 13551860
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccat 574  Q
    ||||||||| ||||| ||||||||||| | |||||||||||||||    
T  13551904 aaataagttattttggtgatttttgctcaattaagtgtaaaccat 13551860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 155062 - 155004
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  155062 ataagttgttttgatgatttttgctcattcaagtgtgaaccatgaattgatgagtgatt 155004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 590
Target Start/End: Original strand, 12463728 - 12463786
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  12463728 ataagttgttttggtgatttttgctcatttaagtgtaaaccatgaattgatgaatgatt 12463786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 538 - 590
Target Start/End: Complemental strand, 12487808 - 12487756
Alignment:
Q  538 tgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  12487808 tgttttgatgatttttgcttatttaagtgtgaactatgaattgatgagtgatt 12487756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 14354369 - 14354311
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||||| ||| || |||||||| |||||||| ||||||||||    
T  14354369 ataagttgttttgatgatttttgattaattgagtgtaaatcatgaattaatgagtgatt 14354311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 590
Target Start/End: Original strand, 23294320 - 23294378
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  23294320 ataagttgttttgatgattttagcttatttgagtctaaattatgaattgataagtgatt 23294378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 23350330 - 23350272
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||| |||||||||||||||||||||||| ||||||  | |||||| ||||||||||||    
T  23350330 ataacttgttttgatgatttttgcttattcaagtgtgtaacatgaaatgatgagtgatt 23350272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 22545927 - 22545878
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaatt 579  Q
    |||||||||||||  |||||||||||| | ||||||||||||||||||||    
T  22545927 aaataagttgtttcaatgatttttgctcaattaagtgtaaaccatgaatt 22545878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 590
Target Start/End: Original strand, 14566617 - 14566674
Alignment:
Q  533 taagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||| |||||| || ||||| ||| || |||||||| |||||||||||||||||||    
T  14566617 taagttattttgaagacttttgattaattgagtgtaaatcatgaattgatgagtgatt 14566674  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 17913691 - 17913647
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccat 574  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  17913691 aaataagttgttttggtgatttttcctcaattaagtgtaaaccat 17913647  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 17959936 - 17959878
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||| |||||||||||||||| |||||||  |||||||||||||||||||    
T  17959936 ataagttgttttggtgatttttgcttatttgagtgtaagtcatgaattgatgagtgatt 17959878  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 590
Target Start/End: Original strand, 19605821 - 19605881
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||| |||| |||||| | |||| ||||| ||||||||||||||||||||    
T  19605821 aaataagttgttttggtgatatttgctcaattaattgtaagccatgaattgatgagtgatt 19605881  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 11776290 - 11776232
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||| |||||||||| ||| || ||||| || ||||||||| |||||||||    
T  11776290 ataagttgttttaatgatttttgattaattgagtgtgaatcatgaattggtgagtgatt 11776232  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 579
Target Start/End: Original strand, 2493811 - 2493860
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaatt 579  Q
    ||||||||||||||| || ||||| || | ||||||||||||||||||||    
T  2493811 aaataagttgttttggtgtttttttctcaattaagtgtaaaccatgaatt 2493860  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 10112357 - 10112402
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatg 575  Q
    |||||||||||||| |||||||||||| | | ||||||||||||||    
T  10112357 aaataagttgttttaatgatttttgctcaatcaagtgtaaaccatg 10112402  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 590
Target Start/End: Complemental strand, 15711484 - 15711427
Alignment:
Q  533 taagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||| |||||||| ||| || ||||| || ||||||||| |||||||||    
T  15711484 taagttgttttgaagatttttgattaattgagtgtgaatcatgaattggtgagtgatt 15711427  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 16571266 - 16571214
Alignment:
Q  536 gttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtga 588  Q
    ||||||||||||||||||  ||| || |||||||| ||||||||| |||||||    
T  16571266 gttgttttgatgattttttattaattgagtgtaaatcatgaattggtgagtga 16571214  T

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Target: scaffold0417 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 3682 - 3613
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||  |||||||||    
T  3682 ataagttgttttggtgatttttgttcaattaagtgtaatccatgaattgatgagtgattattgttggaac 3613  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 601
Target Start/End: Complemental strand, 25263343 - 25263274
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaac 601  Q
    ||||||||||||| ||||||||||||| ||||||||||||| | || ||||||||||||  |||||||||    
T  25263343 ataagttgttttggtgatttttgcttaattaagtgtaaacccttaaatgatgagtgattattgttggaac 25263274  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 21695164 - 21695105
Alignment:
Q  532 ataagttgtttt-gatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||| |||||||||| |||||||||||||||| ||| |||||||||||||||    
T  21695164 ataagttgtttttgatgatttttacttatttaagtgtaaatcatcaattgatgagtgatt 21695105  T

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Target: scaffold1114 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 532 - 579
Target Start/End: Complemental strand, 1960 - 1913
Alignment:
Q  532 ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaatt 579  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  1960 ataagttgttttgatgatttttgcttatttaagtgcgaaccatgaatt 1913  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 590
Target Start/End: Complemental strand, 21654271 - 21654214
Alignment:
Q  533 taagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    |||||||||||||||||||||| ||| || |||||||| ||||||||| |||||||||    
T  21654271 taagttgttttgatgatttttgattaattgagtgtaaatcatgaattggtgagtgatt 21654214  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 590
Target Start/End: Complemental strand, 28774289 - 28774234
Alignment:
Q  535 agttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||||||||  || || |||||||| |||||||||||| ||||||    
T  28774289 agttgttttgatgatttttgactagttgagtgtaaatcatgaattgatgtgtgatt 28774234  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 590
Target Start/End: Original strand, 106006 - 106066
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatt 590  Q
    ||||||||||||||| | ||||||||| | ||||||||| ||||||||||  |||||||||    
T  106006 aaataagttgttttggtaatttttgctcaattaagtgtagaccatgaatttgtgagtgatt 106066  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 204870 - 204926
Alignment:
Q  540 ttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgtt 596  Q
    |||| ||||||||||||||| | |||||||| ||| ||||||||||||||| |||||    
T  204870 tttttatgatttttgcttatatgagtgtaaatcataaattgatgagtgattaatgtt 204926  T

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Target: scaffold0115 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 36913 - 36960
Alignment:
Q  530 aaataagttgttttgatgatttttgcttatttaagtgtaaaccatgaa 577  Q
    |||||||| |||||| ||||||||||| | ||||||||||||||||||    
T  36913 aaataagtggttttggtgatttttgctcaattaagtgtaaaccatgaa 36960  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 576
Target Start/End: Original strand, 18621979 - 18622020
Alignment:
Q  535 agttgttttgatgatttttgcttatttaagtgtaaaccatga 576  Q
    |||||||||||||||||||| |||||| | ||||||||||||    
T  18621979 agttgttttgatgatttttgattatttgaatgtaaaccatga 18622020  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 582
Target Start/End: Complemental strand, 10617 - 10581
Alignment:
Q  546 tgatttttgcttatttaagtgtaaaccatgaattgat 582  Q
    |||||||||||||||| |||||||| |||||||||||    
T  10617 tgatttttgcttatttgagtgtaaatcatgaattgat 10581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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