View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_40 (Length: 228)
Name: NF8551_low_40
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 827419 - 827213
Alignment:
| Q |
1 |
aataattaatacaacaaaacaatgcaacaaaactacgcaatcaacgacaatacagatatgataattaattttgtggtgtagtggtggttcttgttggcac |
100 |
Q |
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| T |
827419 |
aataattaatacaacaaaacaatgaaacagaactacgcaatcaacgacaatacagatatgataattaattttgtggtgtagtggtggttcttgttggcac |
827320 |
T |
|
| Q |
101 |
ttgtaccattgttctttgattttgcttgttaattttttccctgcccattcctcttttgtaatgtgtttttattattggcacatcttgtgctttcaatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
827319 |
ttgtaccattgttctttgattttgcttgttaattttttccctgcccattcctcttttgtaatgtgtttttattattggcacatcttgtgctttcaatagt |
827220 |
T |
|
| Q |
201 |
ttcattc |
207 |
Q |
| |
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||||||| |
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| T |
827219 |
ttcattc |
827213 |
T |
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