View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8551_low_41 (Length: 222)

Name: NF8551_low_41
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8551_low_41
NF8551_low_41
[»] chr3 (56 HSPs)
chr3 (8-205)||(28481819-28482016)
chr3 (47-201)||(28147644-28147798)
chr3 (47-201)||(28481690-28481844)
chr3 (4-106)||(28002207-28002309)
chr3 (4-96)||(28510795-28510887)
chr3 (21-96)||(28053514-28053589)
chr3 (21-96)||(28063939-28064014)
chr3 (102-201)||(28132052-28132151)
chr3 (4-107)||(28147570-28147673)
chr3 (105-201)||(11418833-11418929)
chr3 (7-107)||(28481986-28482086)
chr3 (108-201)||(27975454-27975547)
chr3 (108-201)||(28510731-28510824)
chr3 (108-179)||(27918496-27918567)
chr3 (108-201)||(28002280-28002373)
chr3 (108-201)||(28147836-28147929)
chr3 (108-175)||(28159331-28159398)
chr3 (108-202)||(18026526-18026620)
chr3 (102-180)||(28081866-28081944)
chr3 (130-201)||(28053577-28053648)
chr3 (130-201)||(28064002-28064073)
chr3 (108-178)||(28183892-28183962)
chr3 (108-201)||(27461102-27461195)
chr3 (121-201)||(28481572-28481652)
chr3 (1-40)||(28147829-28147868)
chr3 (108-202)||(12146125-12146219)
chr3 (108-178)||(27347539-27347609)
chr3 (108-201)||(17746229-17746322)
chr3 (47-96)||(18026657-18026706)
chr3 (108-201)||(19047549-19047642)
chr3 (47-96)||(27918390-27918439)
chr3 (44-96)||(12146039-12146091)
chr3 (47-107)||(28183771-28183831)
chr3 (108-199)||(27392292-27392383)
chr3 (47-94)||(28081763-28081810)
chr3 (108-202)||(27376308-27376402)
chr3 (47-96)||(11418749-11418798)
chr3 (47-96)||(27347462-27347511)
chr3 (47-96)||(27376222-27376271)
chr3 (47-96)||(27461230-27461279)
chr3 (47-96)||(28131965-28132014)
chr3 (108-160)||(26115042-26115094)
chr3 (48-92)||(26180779-26180823)
chr3 (48-92)||(26210270-26210314)
chr3 (48-92)||(26237514-26237558)
chr3 (1-45)||(28481620-28481664)
chr3 (3-45)||(17746292-17746334)
chr3 (3-45)||(19047612-19047654)
chr3 (108-198)||(26210150-26210240)
chr3 (47-96)||(17746360-17746409)
chr3 (47-96)||(19047680-19047729)
chr3 (47-96)||(27975367-27975416)
chr3 (4-40)||(11418826-11418862)
chr3 (44-92)||(26115158-26115206)
chr3 (108-160)||(26142354-26142406)
chr3 (121-201)||(28035530-28035610)
[»] scaffold0257 (2 HSPs)
scaffold0257 (18-107)||(17357-17446)
scaffold0257 (108-205)||(17427-17524)
[»] chr7 (2 HSPs)
chr7 (47-105)||(8693526-8693584)
chr7 (108-179)||(8693392-8693463)
[»] scaffold0043 (2 HSPs)
scaffold0043 (108-205)||(54783-54880)
scaffold0043 (47-96)||(54914-54963)
[»] chr2 (3 HSPs)
chr2 (102-179)||(8019885-8019962)
chr2 (47-96)||(22391144-22391193)
chr2 (108-168)||(22391264-22391324)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 28481819 - 28482016
Alignment:
Q  8 caagtattcttagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataata 107  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||| ||||||| |  || || |||    
T  28481819 caagtattcttagctttgggaagcatgtctttgttgtattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaactctcagatcata 28481918  T
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcatatct 205  Q
    ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||| ||| |||||||| | || |||||||||||||||||    
T  28481919 tagctcaggaaggtctttacatatggagattggaaacacatatttcaacttgttgcactttactactacaagtatttgtagctttgggaagcatatct 28482016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 28147798 - 28147644
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataatatagctcaggaatgtctttatacatggagattggaaagac 146  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||  ||||| ||||||| |||||| ||||||||| ||||| |||| ||||||    
T  28147798 tctccaaatcatcttcaataatatgcctcaactcattgcattcttcaattctcatatgatatagcgcaggaaggtctttatatatggaaattgaaaagac 28147699  T
Q  147 atatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||||||||||||||||||||||| | | ||||  ||||||||||||    
T  28147698 atatttcaacttgttgcactttattacaacaattctttttagatttgggaagcat 28147644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 28481690 - 28481844
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataatatagctcaggaatgtctttatacatggagattggaaagac 146  Q
    |||||| |||||||||| |||||||| ||||||| |||||||||||||||  ||||| ||||||| |||||| ||||||| | ||||| |||| ||||||    
T  28481690 tctccatatcatcttcaataatatgcctcaactcattgcattcttcaattctcatatgatatagcgcaggaaggtctttacatatggaaattgaaaagac 28481789  T
Q  147 atatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    ||||||||||||||||||||||| |||| |||||||  ||| |||||||||||||    
T  28481790 atatttcaacttgttgcactttactacaccaagtattcttagctttgggaagcat 28481844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 28002309 - 28002207
Alignment:
Q  4 acaacaagtattcttagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatat 103  Q
    |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||  |||||    
T  28002309 acaaaaagtattcttagctttgggaagcatgtctttgttgtattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaattctcatat 28002210  T
Q  104 aat 106  Q
    |||    
T  28002209 aat 28002207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 28510795 - 28510887
Alignment:
Q  4 acaacaagtattcttagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  28510795 acaacaagtattcttagttttgggaagcatgtctttgttgtattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaatt 28510887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 28053589 - 28053514
Alignment:
Q  21 ctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  28053589 ctttgggaagcatgtctttgctgtattctccaaatcatcttcaaaaatatgcttcaactcgttgcattcttcaatt 28053514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 28064014 - 28063939
Alignment:
Q  21 ctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  28064014 ctttgggaagcatgtctttgctgtattctccaaatcatcttcaaaaatatgcttcaactcgttgcattcttcaatt 28063939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 28132151 - 28132052
Alignment:
Q  102 ataatatagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||||||||  |||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||||||    
T  28132151 ataatatagctcaggaagctctttacatacggagattggaaagacatatttcaacttgttgcactttactacaacaaccatttttaactttgggaagcat 28132052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 28147673 - 28147570
Alignment:
Q  4 acaacaagtattcttagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatat 103  Q
    ||||||| | || |||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||  |||||    
T  28147673 acaacaattctttttagatttgggaagcatgtctttgttgtattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaattctcatat 28147574  T
Q  104 aata 107  Q
    ||||    
T  28147573 aata 28147570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 11418929 - 11418833
Alignment:
Q  105 atatagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    ||||||||||||||  |||||| ||| |||||||||||| ||||||||||||||||||||||||  |||||||||| | |||| |||||||||||||    
T  11418929 atatagctcaggaagctctttacacagggagattggaaaaacatatttcaacttgttgcactttgctacaacaagtgtttttagctttgggaagcat 11418833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 28481986 - 28482086
Alignment:
Q  7 acaagtattcttagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataat 106  Q
    |||||||||  |||||||||||||||| |||||| |||| ||||||||||||||||| | |||||||||||||| ||||| |||||||||  ||||||||    
T  28481986 acaagtatttgtagctttgggaagcatatctttgttgtattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattctcatataat 28482085  T
Q  107 a 107  Q
    |    
T  28482086 a 28482086  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 27975547 - 27975454
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    ||||||| |||  |||||| | |||||||||||||| ||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||    
T  27975547 tagctcaagaagctctttacatatggagattggaaacacatatttcaacttgttgcacctttttacaacaagtgtttttaactttgggaagcat 27975454  T

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Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 28510731 - 28510824
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||| ||||  |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||  ||||||||||||    
T  28510731 tagctctggaagctctttagatatggagattggaaagacatatttcaacttgttgcactttactacaacaagtattcttagttttgggaagcat 28510824  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 27918567 - 27918496
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaag 179  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  27918567 tagctcaggaaggtctttacatatggagattggaaagacatatttcaacttgttgcactttactacagcaag 27918496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 28002373 - 28002280
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||  ||||| ||||||  ||| |||||||||||||    
T  28002373 tagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcacttttctacaaaaagtattcttagctttgggaagcat 28002280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 28147929 - 28147836
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||   |||||||||||  ||| |||||||||||||    
T  28147929 tagctcaggaagctctttagatatggagattggaaacacatatttcaacttgttgcacttttccacaacaagtattcttagctttgggaagcat 28147836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 28159398 - 28159331
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaa 175  Q
    |||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  28159398 tagctcaggaagctctttacatatggagattggaaatacatatttcaacttgttgcactttattacaa 28159331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 18026526 - 18026620
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcata 202  Q
    |||||||||||  |||||||| ||||||||||||||||||| ||||||||| |  ||| ||| |||||||||| | |||| ||||||||||||||    
T  18026526 tagctcaggaagctctttatatatggagattggaaagacatttttcaacttatgacacgttactacaacaagtgtttttagctttgggaagcata 18026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 28081944 - 28081866
Alignment:
Q  102 ataatatagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagt 180  Q
    ||||| |||||||||||  |||||||| | |||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  28081944 ataatttagctcaggaagctctttatatacggagattggaaagacatatttcaacttgttacactttgctacaacaagt 28081866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 28053648 - 28053577
Alignment:
Q  130 atggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||| || | | ||||||||||||||||||    
T  28053648 atggagattggaaacacatatttcaacttgttacactttactacaaaaattgtatttaactttgggaagcat 28053577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 28064073 - 28064002
Alignment:
Q  130 atggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||| || | | ||||||||||||||||||    
T  28064073 atggagattggaaacacatatttcaacttgttacactttactacaaaaattgtatttaactttgggaagcat 28064002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 28183962 - 28183892
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaa 178  Q
    |||||||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  28183962 tagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcacttttctacaacaa 28183892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 27461102 - 27461195
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||  |||||| | ||||| ||||||||||||||||||||||  |||||||||| ||||| |||| | || | |||||||||||||    
T  27461102 tagctcaggaagctctttacatatggacattggaaagacatatttcaactgattgcactttactacaataagtgttttaagctttgggaagcat 27461195  T

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Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 28481572 - 28481652
Alignment:
Q  121 tctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||   ||||||||||   ||| |||||||||||||    
T  28481572 tctttagatatggagattggaaacacatatttcaacttgttgcacttttccacaacaagtagtgttagctttgggaagcat 28481652  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28147868 - 28147829
Alignment:
Q  1 tccacaacaagtattcttagctttgggaagcatgtctttg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28147868 tccacaacaagtattcttagctttgggaagcatgtctttg 28147829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 12146219 - 12146125
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcata 202  Q
    |||||||||||  |||||| | |||||||||||||| |||||||| ||| | |||||| || |||| |||||| | |||| ||||||||||||||    
T  12146219 tagctcaggaagctctttacatatggagattggaaacacatattttaacattttgcacctttttaccacaagtgtttttagctttgggaagcata 12146125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 27347609 - 27347539
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaa 178  Q
    |||||||||||  |||||| | |||||||||||||| |||||||||||| ||||||||| | |||||||||    
T  27347609 tagctcaggaagctctttacatatggagattggaaacacatatttcaacatgttgcactcttttacaacaa 27347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 17746229 - 17746322
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||  |||||| | |||||||||||||||||||||  ||||||||||||||||   ||| ||||| |  ||| |||||||||||||    
T  17746229 tagctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcacttttgcacagcaagtgttcttagctttgggaagcat 17746322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 18026657 - 18026706
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  18026657 tctccaaatcatcttcaataatatgcttcaactctttgcaatcttcaatt 18026706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 19047549 - 19047642
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||||||||  |||||| | |||||||||||||||||||||  ||||||||||||||||   ||| ||||| |  ||| |||||||||||||    
T  19047549 tagctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcacttttgcacagcaagtgttcttagctttgggaagcat 19047642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 27918439 - 27918390
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  27918439 tctccaaatcatcttcaataatatacttcaactctttgcattcttcaatt 27918390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 12146091 - 12146039
Alignment:
Q  44 tactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    |||||||||||||||||||| | |||||||||||||| |||||||| ||||||    
T  12146091 tactctccaaatcatcttcaatcatatgcttcaactcattgcattcatcaatt 12146039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 28183831 - 28183771
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataata 107  Q
    ||||||||||||||||| | |||||||||||||| ||||| |||||||||  |||||||||    
T  28183831 tctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattctcatataata 28183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 27392292 - 27392383
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagc 199  Q
    |||||||||||  |||||| | |||||||||||||| |||||||||||| | |||||||||  |||||||| | | || | |||||||||||    
T  27392292 tagctcaggaagctctttacatatggagattggaaacacatatttcaacattttgcacttttctacaacaactgttttgagctttgggaagc 27392383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 28081810 - 28081763
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaa 94  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  28081810 tctccaaatcatcttcaataatatgctttaactctttgcattcttcaa 28081763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 27376402 - 27376308
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcata 202  Q
    |||||||||||  |||| | | ||||||||||||||||||| ||||||| | |||||| || |||| |||||| | | || ||||||||||||||    
T  27376402 tagctcaggaagctcttcacatatggagattggaaagacatttttcaacattttgcacattcttaccacaagtgtttgtagctttgggaagcata 27376308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 11418798 - 11418749
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||| ||||||||| | |||||||||||||| |||||||||||||||    
T  11418798 tctccaagtcatcttcaatcatatgcttcaactctttgcattcttcaatt 11418749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 27347511 - 27347462
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  27347511 tctccaaatcatcttcaatcatatgcttcaactctttgcatttttcaatt 27347462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 27376271 - 27376222
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| | |||||||||||||| |||||||| ||||||    
T  27376271 tctccaaatcatcttcaatcatatgcttcaactccttgcattcatcaatt 27376222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 27461230 - 27461279
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    |||||||||||| |||| | |||||||||||||| |||||||||||||||    
T  27461230 tctccaaatcatattcaattatatgcttcaactctttgcattcttcaatt 27461279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 28132014 - 28131965
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| | ||||||||||| || |||||||||||||||    
T  28132014 tctccaaatcatcttcaattatatgcttcaattctttgcattcttcaatt 28131965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 26115042 - 26115094
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgt 160  Q
    |||||||||||  |||||| | ||||||| |||||||||||||||||||||||    
T  26115042 tagctcaggaagctctttacaaatggagactggaaagacatatttcaacttgt 26115094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 26180779 - 26180823
Alignment:
Q  48 ctccaaatcatcttcagtaatatgcttcaactcgttgcattcttc 92  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  26180779 ctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 26210270 - 26210314
Alignment:
Q  48 ctccaaatcatcttcagtaatatgcttcaactcgttgcattcttc 92  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  26210270 ctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 26237514 - 26237558
Alignment:
Q  48 ctccaaatcatcttcagtaatatgcttcaactcgttgcattcttc 92  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  26237514 ctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26237558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28481620 - 28481664
Alignment:
Q  1 tccacaacaagtattcttagctttgggaagcatgtctttgctgta 45  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||    
T  28481620 tccacaacaagtagtgttagctttgggaagcatgtctttgttgta 28481664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 17746292 - 17746334
Alignment:
Q  3 cacaacaagtattcttagctttgggaagcatgtctttgctgta 45  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  17746292 cacagcaagtgttcttagctttgggaagcatgtctttgttgta 17746334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 19047612 - 19047654
Alignment:
Q  3 cacaacaagtattcttagctttgggaagcatgtctttgctgta 45  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  19047612 cacagcaagtgttcttagctttgggaagcatgtctttgttgta 19047654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 26210150 - 26210240
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaag 198  Q
    |||||||||||  |||||| | ||||||| |||||| ||||||||||||||||  || ||| ||||||| ||| | | || ||||||||||    
T  26210150 tagctcaggaaactctttacaaatggagactggaaacacatatttcaacttgtcacattttgttacaaccagtgtttctagctttgggaag 26210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 17746360 - 17746409
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    |||||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  17746360 tctccaaatcatcttcaaaaatatgtgtcaactctttgcattcttcaatt 17746409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 19047680 - 19047729
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    |||||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  19047680 tctccaaatcatcttcaaaaatatgtgtcaactctttgcattcttcaatt 19047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 27975416 - 27975367
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    |||||||||||| |||| | |||||||||||||| ||||| |||||||||    
T  27975416 tctccaaatcatattcaattatatgcttcaactctttgcactcttcaatt 27975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 11418862 - 11418826
Alignment:
Q  4 acaacaagtattcttagctttgggaagcatgtctttg 40  Q
    ||||||||| || ||||||||||||||||||||||||    
T  11418862 acaacaagtgtttttagctttgggaagcatgtctttg 11418826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 26115158 - 26115206
Alignment:
Q  44 tactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttc 92  Q
    |||| |||||||| |||||| | |||||||||||||| |||||||||||    
T  26115158 tactttccaaatcgtcttcaatgatatgcttcaactctttgcattcttc 26115206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 26142354 - 26142406
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgt 160  Q
    ||||| |||||  |||||| | |||||||||||||||||||| ||||||||||    
T  26142354 tagcttaggaaactctttacaaatggagattggaaagacatacttcaacttgt 26142406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 28035610 - 28035530
Alignment:
Q  121 tctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcat 201  Q
    |||||| | ||||||||||||||||||||||| ||||  ||||| | || |||| ||||| | | || |||||||||||||    
T  28035610 tctttacatatggagattggaaagacatattttaactgattgcattgtactacagcaagtgtttgtagctttgggaagcat 28035530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 17446 - 17357
Alignment:
Q  18 tagctttgggaagcatgtctttgctgtactctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataata 107  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||| | |||||||||||||| ||||| |||||||||  |||||||||    
T  17446 tagctttgggaagcatatctttgttgtattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattgtcatataata 17357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 17524 - 17427
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcatatct 205  Q
    |||||||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||| |||| ||||    | || |||||||||||||||||    
T  17524 tagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcactttactacagcaagagattgtagctttgggaagcatatct 17427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 8693526 - 8693584
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatttccatataa 105  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||  |||||||    
T  8693526 tctccaaatcatcttcaataatatgcttcaactctttgcattcttcaattctcatataa 8693584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 8693392 - 8693463
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaag 179  Q
    |||||||||||  || ||| | ||||||| ||||||||||||||||||| ||| ||||||||| || |||||    
T  8693392 tagctcaggaagctcgttacatatggagactggaaagacatatttcaacatgtcgcactttatcactacaag 8693463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 54783 - 54880
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaagtatgtttaactttgggaagcatatct 205  Q
    |||||||||||  |||||| | ||||||||||||||||||| || ||||||||||||| ||   ||||||||| |  |||||||| ||||||||||||    
T  54783 tagctcaggaagctctttacatatggagattggaaagacattttccaacttgttgcacctttgcacaacaagtgttcttaactttaggaagcatatct 54880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 54914 - 54963
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  54914 tctccaaatcatcttcaatcatatgcttcaactctttgcattcttcaatt 54963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 8019962 - 8019885
Alignment:
Q  102 ataatatagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcactttattacaacaag 179  Q
    ||||| |||||||||||  |||||| | |||||||||||||||||||  ||||||||| ||||||||| |||||||||    
T  8019962 ataatttagctcaggaagctctttacatatggagattggaaagacatggttcaacttgatgcactttactacaacaag 8019885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 22391193 - 22391144
Alignment:
Q  47 tctccaaatcatcttcagtaatatgcttcaactcgttgcattcttcaatt 96  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  22391193 tctccaaatcatcttcaataatatgcttcaattctttgcattcttcaatt 22391144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 22391324 - 22391264
Alignment:
Q  108 tagctcaggaatgtctttatacatggagattggaaagacatatttcaacttgttgcacttt 168  Q
    |||||||||||  |||||| | ||||||||||||||||||||||| ||| | |||||||||    
T  22391324 tagctcaggaagctctttacatatggagattggaaagacatattttaacattttgcacttt 22391264  T

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