View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_47 (Length: 215)
Name: NF8551_low_47
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 21777654 - 21777487
Alignment:
| Q |
31 |
ctccaaagtcgaaaccaataataattgatgctacatagagaccatttgggacattaaatgcaattagaagatgaccaaaacaagataatgtaaggattga |
130 |
Q |
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| T |
21777654 |
ctccaaagcagaaaccaataataattgatgctacatagagaccatttgggatattaaatgcaattagaagatgaccaaaacaagatactgtaaggattga |
21777555 |
T |
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| Q |
131 |
tgttagaatgagaggtctagggagttttaatttggttatgataaattctgagataaccccttgtgcaa |
198 |
Q |
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| T |
21777554 |
tgttagaatgagaggtctagggagttttaactttgttatgataaattctgagataaccccttgtgcaa |
21777487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 19712729 - 19712883
Alignment:
| Q |
41 |
gaaaccaataataattgatgctacatagagaccatttgggacattaaatgcaattagaagatgaccaaaacaagataatgtaaggattgatgttagaatg |
140 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| || ||| |
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| T |
19712729 |
gaaaccaataataattgatgctacataaagaccatttgggacattaaatgcaattagaaggtgacctaaacaagagaatataaggattgatgtgagcatg |
19712828 |
T |
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| Q |
141 |
agaggtctagggagttttaatttggttatgataaattctgagataaccccttgtg |
195 |
Q |
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| T |
19712829 |
agtggtctagggagttttaactttgttatgataaattctgaaataaccccttgtg |
19712883 |
T |
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