View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_5 (Length: 604)
Name: NF8551_low_5
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 135 - 597
Target Start/End: Complemental strand, 29201836 - 29201377
Alignment:
| Q |
135 |
tagttgtcaaataaaaaatagcagcagattttgaaaatacaaaaatcaaagtgttgtattgtagtttatttcagaagttaaaaatgactaataataaaaa |
234 |
Q |
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| T |
29201836 |
tagttgtcaaataaaaaatagcagcagattttgaaaatacaaaaatcaaagtgttgtattgtagtttatttcagaagttaaaaatgactaataataaaaa |
29201737 |
T |
|
| Q |
235 |
ggatgcagccacatttatcattatgttgggtggtcccagggagtggcagaagtaactgctaactagttatgttcggacccttcaaagacattcacacatc |
334 |
Q |
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| T |
29201736 |
ggatgcagccacatttatcattatgttgggtggtcccagggagtggcagaaggaaccactaactagttatgtctcgacccatcaaa-acattgacacatc |
29201638 |
T |
|
| Q |
335 |
atttttatattaagtactctcttcgttcttatttataaacagaaatatgttgataaaagttgatatatttaatacaaagttaagactaaataatacattg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
29201637 |
atttttatattaagtactctcttcgttcttatttataaacagaaatatgttgataaaaattgatatatttaatacaaagttaagacta---aatacattg |
29201541 |
T |
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| Q |
435 |
attttctttgactta-nnnnnnnnataaataaaaatggagggagtatatcagtaatatatcagttacctctcttatttatcaaatctttcatctattaat |
533 |
Q |
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| T |
29201540 |
attttctttgacttatttttgtttataaataaaaatggagggagtatataagtagtatatcagttacctctcttatttatcaaatctttcatctattaat |
29201441 |
T |
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| Q |
534 |
agtcgatgtgtaactaactactcacgtttgactttcaccttgttaataattgttagaacaccaa |
597 |
Q |
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| T |
29201440 |
agtcgatgtgtaactaactagtcacgtttgactttcaacttgttaataattgtcagaacaccaa |
29201377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 29202008 - 29201891
Alignment:
| Q |
16 |
caccaacttggtccaaaaacgggaatttgatcgattgagttgcaaaaacatgtttttctttgtgttctgattggttggtataacactctcactttcacat |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
29202008 |
caccaacttggtccaaaaacgggaatttgatcaattgagttgcaaaaacatgtttttctttgtgttctgattggttggtataacagtttcactttcacat |
29201909 |
T |
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| Q |
116 |
ctaaacattagtgctaca |
133 |
Q |
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| T |
29201908 |
ctaaacattagtgctaca |
29201891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 29198453 - 29198407
Alignment:
| Q |
54 |
gttgcaaaaacatgtttttctttgtgttctgattggttggtataaca |
100 |
Q |
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| T |
29198453 |
gttgcaaaaacatgtttttctttgagttctgattggttactataaca |
29198407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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