View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_6 (Length: 550)
Name: NF8551_low_6
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 40255426 - 40255783
Alignment:
| Q |
1 |
agccaactttatgtgtagatttagcatctctaggttgcaattgcattgcctttttatattgtgtatctattcccttattattttgttcttttttatccat |
100 |
Q |
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| T |
40255426 |
agccaactttatgtgtagatttagcatctctaggttgcaattgcattgcctttttatattgtgtatctattcccttattattttgttcttttttatccat |
40255525 |
T |
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| Q |
101 |
caaatatttgaattgaatactgaagaagaaaaacaatggtaaacttggcatactttttgtagtcacgtatgcagtttttcattatttatgatgatttgaa |
200 |
Q |
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| T |
40255526 |
caaatatttgaattgaatactgaagaagaaaaacaatggtaaacttggcatactttttgtagtcacgtatgcagtttttcattatttatgatgatttgaa |
40255625 |
T |
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| Q |
201 |
gctagatgttactcttcatatctcagcatatattcaaagtggactttg-------------ggaattttccttgagtgaaaagatattagtaattaagtc |
287 |
Q |
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| T |
40255626 |
gctagatgttactcttcatatctcagcatatattcaaagtggactttggaaccatgcagttggaattttccttgagtgaaaagatattagtaattaagtc |
40255725 |
T |
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| Q |
288 |
atgctgataaaggtttttcctgaaaagctcttattactcaaaaatcttaagcatgaaa |
345 |
Q |
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| T |
40255726 |
atgctgataaaggttttccctgaaaagctcttattactcaaaaatcttaagcatgaaa |
40255783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 412 - 533
Target Start/End: Original strand, 40255854 - 40255974
Alignment:
| Q |
412 |
ctattacaaacaaccagaaaatgaggcaacagtaggaaggannnnnnnnctaccctctaaatttttaattgaggaggggagtctcaaatcagaggtgagt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
40255854 |
ctattacaaacaaccagaaaatgaggcaacagtaggaaggattttttttctaccctctaaatttt-aattgaggaggggagtctcagatcagaggtgagt |
40255952 |
T |
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| Q |
512 |
aaagtttgtcgaggattgtttt |
533 |
Q |
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| T |
40255953 |
aaagtttgtcgaggattgtttt |
40255974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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