View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8551_low_9 (Length: 479)
Name: NF8551_low_9
Description: NF8551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8551_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 5 - 469
Target Start/End: Original strand, 43939420 - 43939884
Alignment:
| Q |
5 |
gaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcggtaactctaaga |
104 |
Q |
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| T |
43939420 |
gaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcggtaactctgaga |
43939519 |
T |
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| Q |
105 |
cttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacgaacaaaatcacat |
204 |
Q |
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| T |
43939520 |
cttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacgatcaaaatcacat |
43939619 |
T |
|
| Q |
205 |
accataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagacttttgttaataccgggcttctaacaatg |
304 |
Q |
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| T |
43939620 |
accataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaataccgggcttctaacaatg |
43939719 |
T |
|
| Q |
305 |
attgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttc |
404 |
Q |
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| T |
43939720 |
attgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttc |
43939819 |
T |
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| Q |
405 |
catttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggt |
469 |
Q |
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| T |
43939820 |
catttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggt |
43939884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 43927847 - 43927944
Alignment:
| Q |
341 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccc |
438 |
Q |
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| T |
43927847 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttccc |
43927944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 15608285 - 15608185
Alignment:
| Q |
338 |
aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact |
433 |
Q |
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| T |
15608285 |
aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact |
15608186 |
T |
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| Q |
434 |
t |
434 |
Q |
| |
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| |
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|
| T |
15608185 |
t |
15608185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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