View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_high_15 (Length: 202)
Name: NF8552_high_15
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 11325442 - 11325272
Alignment:
| Q |
14 |
ataatactctcactgtgagggtcactctaattacattcataatcaaaattctgatatttgagtctaatattttgttattcactaacacaagtaactaata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11325442 |
ataatactctcactgtgagggtcactctaattacattcataatcaaaagtctgatatttgagtctaatattttgttattcactaacataagtaactaata |
11325343 |
T |
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| Q |
114 |
ttctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtat |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325342 |
ttctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtat |
11325272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 11483463 - 11483293
Alignment:
| Q |
14 |
ataatactctcactgtgagggtcactctaattacattcataatcaaaattctgatatttgagtctaatattttgttattcactaacacaagtaactaata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11483463 |
ataatactctcactgtgagggtcactctaattacattcataatcaaaagtctgatatttgagtctaatattttgttattcactaacataagtaactaata |
11483364 |
T |
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| Q |
114 |
ttctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtat |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483363 |
ttctgatcgttatataatattcttcactttctttgttaaattaatataataatgcttatgttaatcagtat |
11483293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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