View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_high_3 (Length: 446)
Name: NF8552_high_3
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 8683259 - 8682814
Alignment:
| Q |
1 |
aatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatactattataaaa |
100 |
Q |
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| T |
8683259 |
aatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatactattataaaa |
8683160 |
T |
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| Q |
101 |
gttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatcagaactgtaat |
200 |
Q |
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| T |
8683159 |
gttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatcagaactgtaat |
8683060 |
T |
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| Q |
201 |
gccaagagttagaaggtaatgctgaaatcccaatatcactgcttgacctgcattatgatcaaaagattgattcaaattgtgaaccagtacactcttaagc |
300 |
Q |
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| T |
8683059 |
gccaagagttagaaggtaatgctgaaatcccaatatcactgcttgacctgcattatgatc-aaagattgattcaaattgtgaaccagtacactcttaagc |
8682961 |
T |
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| Q |
301 |
aaaaattagttaatcaatttttcatcaacatgtcataattttttcaaaaataca-taagataggtgtactaacgccatggaggtggactgttaatgcaat |
399 |
Q |
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| T |
8682960 |
aaaaattagttaatcaatttttcatcaacatgtcataattttttcaaaaatacattaagataggtgtactaacgccatggaggtggactgttaatgcaat |
8682861 |
T |
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| Q |
400 |
actgaattccaggtaattgctctttcactggctgtggtgctggcttc |
446 |
Q |
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| T |
8682860 |
actgaattccaggtaattgctctttcactggctgtggtgctggcttc |
8682814 |
T |
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Back To:
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 47579393 - 47579325
Alignment:
| Q |
156 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctg |
224 |
Q |
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| T |
47579393 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcaaaatgtaatgctg |
47579325 |
T |
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