View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8552_high_8 (Length: 373)

Name: NF8552_high_8
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8552_high_8
NF8552_high_8
[»] chr7 (2 HSPs)
chr7 (6-359)||(19930530-19930883)
chr7 (268-330)||(19990316-19990378)
[»] scaffold0321 (1 HSPs)
scaffold0321 (288-358)||(2324-2394)
[»] chr5 (4 HSPs)
chr5 (89-178)||(4287247-4287337)
chr5 (308-358)||(16748658-16748708)
chr5 (269-358)||(29735261-29735350)
chr5 (289-358)||(37343834-37343903)
[»] chr6 (1 HSPs)
chr6 (308-349)||(34247038-34247079)
[»] chr4 (1 HSPs)
chr4 (288-357)||(18983025-18983094)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 359
Target Start/End: Complemental strand, 19930883 - 19930530
Alignment:
Q  6 gtatcatagaacaaaactagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19930883 gtatcatagaacaaaactagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactga 19930784  T
Q  106 atttcaattttgcaatcagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcag 205  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19930783 atttgaattttgcaatcagtttaatcttttgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcag 19930684  T
Q  206 ttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaataacta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19930683 ttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaataacta 19930584  T
Q  306 atcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatac 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19930583 atcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatac 19930530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 19990316 - 19990378
Alignment:
Q  268 ttctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacac 330  Q
    |||||||| ||||||| |||| |||||||| || ||| |||| ||||||||||||||||||||    
T  19990316 ttctatagcactatgtgcctactaagagcttatcactcatccccacattaagcactaccacac 19990378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 2394 - 2324
Alignment:
Q  288 attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata 358  Q
    |||||||||||| | || | |||||||||||||||||||||||  ||||| ||||||||||| ||||||||    
T  2394 attaagagctaaaagctcaacctcacattaagcactaccacacaccatagggatgaaaaatgtagtgcata 2324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 4287247 - 4287337
Alignment:
Q  89 aatcatcccttaac-tgaatttcaattttgcaatcagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtga 178  Q
    |||||||||||||  |||||| |||||||| ||||||||||||||||  ||||| | ||||||| ||||  ||| | ||||| ||||||||    
T  4287247 aatcatcccttaatatgaattgcaattttgtaatcagtttaatctatcattttatacactttcaatctatcttgcagttgctaaaaggtga 4287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 16748708 - 16748658
Alignment:
Q  308 cctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata 358  Q
    ||||||||||||||||||||||  |||||| || |||||||| ||||||||    
T  16748708 cctcacattaagcactaccacatatcatagggacgaaaaatgtagtgcata 16748658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 29735261 - 29735350
Alignment:
Q  269 tctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata 358  Q
    ||||||| || ||| | |||||||||||||| |  | || ||||||||||||| || |||||  ||||||||||| ||||| ||||||||    
T  29735261 tctatagcaccatgcatctattaagagctaaaagttcatgctcacattaagcattatcacacgccatagagatgagaaatgtagtgcata 29735350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 37343834 - 37343903
Alignment:
Q  289 ttaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata 358  Q
    ||||||||||| | || | |||||||||||||||| |||||   ||||| ||||||||||| ||||||||    
T  37343834 ttaagagctaaaagctcaacctcacattaagcactgccacatgccatagggatgaaaaatgtagtgcata 37343903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 34247079 - 34247038
Alignment:
Q  308 cctcacattaagcactaccacacttcatagagatgaaaaatg 349  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  34247079 cctcacattaagcactaccacacaccatagggatgaaaaatg 34247038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 18983025 - 18983094
Alignment:
Q  288 attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcat 357  Q
    |||||||||||| | || |||||| ||||||||||||||||||  || || ||||||| ||| |||||||    
T  18983025 attaagagctaaaagctcatcctcgcattaagcactaccacacgccacagggatgaaatatgtagtgcat 18983094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University