View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_1 (Length: 723)
Name: NF8552_low_1
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 356 - 718
Target Start/End: Original strand, 32239768 - 32240130
Alignment:
| Q |
356 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagtt |
455 |
Q |
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| T |
32239768 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcggtt |
32239867 |
T |
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| Q |
456 |
ttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcata |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239868 |
ttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcata |
32239967 |
T |
|
| Q |
556 |
gctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgtaggctttttgtattctaatgtgatctattaatcttacaatagaac |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239968 |
gctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaac |
32240067 |
T |
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| Q |
656 |
ctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcctctgctgct |
718 |
Q |
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| T |
32240068 |
ctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgct |
32240130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 356 - 491
Target Start/End: Original strand, 46470046 - 46470181
Alignment:
| Q |
356 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagtt |
455 |
Q |
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| T |
46470046 |
atctatacatcttacaaaggatttgcttccgattttactgtgcaattcccttccggtgagttccgctcttctccgcaattggcgctgatttatgtcagtt |
46470145 |
T |
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| Q |
456 |
ttctgtgcatggaggttttgtagctgtgttctatat |
491 |
Q |
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|||||||| |||||| |||||||||||||||||||| |
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| T |
46470146 |
ttctgtgcttggaggctttgtagctgtgttctatat |
46470181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 33435757 - 33435811
Alignment:
| Q |
406 |
ttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagttttctg |
460 |
Q |
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| T |
33435757 |
ttccagcgaaatccgcccttctccgcgtttggcgctgaactctgtcagttttctg |
33435811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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