View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_10 (Length: 403)
Name: NF8552_low_10
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 167 - 386
Target Start/End: Complemental strand, 10035137 - 10034917
Alignment:
| Q |
167 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac |
266 |
Q |
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| T |
10035137 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac |
10035038 |
T |
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| Q |
267 |
gcaccccagctgctgcacctccaaacatcaccgaaccaacacattcacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035037 |
gcaccccagctgctgcacctccaaacatcaccgaaccaacacacacacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg |
10034938 |
T |
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| Q |
367 |
at-ccaacaccgcaattactg |
386 |
Q |
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|| ||||| |||||||||||| |
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| T |
10034937 |
atcccaactccgcaattactg |
10034917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 167 - 386
Target Start/End: Complemental strand, 10095506 - 10095286
Alignment:
| Q |
167 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10095506 |
ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac |
10095407 |
T |
|
| Q |
267 |
gcaccccagctgctgcacctccaaacatcaccgaaccaacacattcacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10095406 |
gcaccccagctgctgcacctccaaacatcaccgaaccaacacacacacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg |
10095307 |
T |
|
| Q |
367 |
at-ccaacaccgcaattactg |
386 |
Q |
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|| ||||| |||||||||||| |
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| T |
10095306 |
atcccaactccgcaattactg |
10095286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 10035258 - 10035137
Alignment:
| Q |
1 |
acgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaagaagaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035258 |
acgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaagaagaaacc |
10035159 |
T |
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| Q |
101 |
aaccacaaaacccaacaaaggc |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
10035158 |
aaccacaaaacccaacaaaggc |
10035137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 10095627 - 10095506
Alignment:
| Q |
1 |
acgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaagaagaaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10095627 |
acgagtatatgcaagacgcacaaccactcgcggcaagaaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaagaagaaacc |
10095528 |
T |
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| Q |
101 |
aaccacaaaacccaacaaaggc |
122 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10095527 |
aaccacaaaacccaacaaaggc |
10095506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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